[ARVADOS] updated: 29c5c69ef3c9ceadbea3085f2268bb5ed8496c04
git at public.curoverse.com
git at public.curoverse.com
Fri Aug 28 10:43:08 EDT 2015
Summary of changes:
.gitignore | 3 +
.../app/assets/stylesheets/application.css.scss | 4 +
.../app/controllers/projects_controller.rb | 6 +-
apps/workbench/app/models/authorized_key.rb | 2 +-
apps/workbench/app/models/repository.rb | 2 +-
.../views/application/_projects_tree_menu.html.erb | 15 +-
apps/workbench/app/views/layouts/body.html.erb | 27 +++-
.../app/views/projects/_show_dashboard.html.erb | 17 +--
.../test/controllers/projects_controller_test.rb | 11 ++
.../test/integration/anonymous_access_test.rb | 9 +-
.../test/integration/application_layout_test.rb | 25 ++--
apps/workbench/test/integration/errors_test.rb | 6 +-
apps/workbench/test/integration/projects_test.rb | 26 +++-
backports/python-llfuse/fpm-info.sh | 10 ++
backports/python-pycurl/fpm-info.sh | 8 +
doc/_config.yml | 8 +-
doc/_includes/_install_git.liquid | 3 +
.../_tutorial_git_repo_expectations.liquid | 3 +
...opy_pipeline_from_curoverse.html.textile.liquid | 63 ++++++++
doc/install/index.html.textile.liquid | 11 +-
doc/install/install-api-server.html.textile.liquid | 10 +-
.../install-arv-git-httpd.html.textile.liquid | 18 ++-
.../install-compute-node.html.textile.liquid | 9 +-
.../install-crunch-dispatch.html.textile.liquid | 82 +++++-----
doc/install/install-keepproxy.html.textile.liquid | 49 +++---
.../install-shell-server.html.textile.liquid | 95 ++++++++++++
.../install-workbench-app.html.textile.liquid | 46 +++---
doc/user/topics/arv-docker.html.textile.liquid | 2 +-
.../add-new-repository.html.textile.liquid | 2 +-
.../git-arvados-guide.html.textile.liquid | 89 +++++++++++
.../running-external-program.html.textile.liquid | 10 ++
.../tutorial-submit-job.html.textile.liquid | 49 +-----
docker/workbench/application.yml.in | 3 +-
sdk/cli/bin/arv-tag | 9 +-
sdk/go/arvadosclient/arvadosclient.go | 158 +++++++++-----------
sdk/go/arvadosclient/arvadosclient_test.go | 90 +++++++++++
sdk/go/arvadosclient/pool.go | 52 +++++++
sdk/go/auth/auth.go | 61 ++++++++
.../go/auth}/basic_auth_go13.go | 2 +-
.../go/auth}/basic_auth_go14.go | 2 +-
.../go/auth}/basic_auth_test.go | 2 +-
.../server.go => sdk/go/httpserver/httpserver.go | 56 +++----
sdk/go/httpserver/log.go | 24 +++
sdk/go/httpserver/responsewriter.go | 43 ++++++
sdk/go/keepclient/hashcheck.go | 24 ++-
sdk/go/keepclient/support.go | 1 -
sdk/pam/.dockerignore | 6 +
sdk/{cwl => pam}/.gitignore | 0
sdk/pam/Dockerfile | 52 +++++++
sdk/pam/MANIFEST.in | 4 +
sdk/pam/README.rst | 21 +++
sdk/pam/arvados_pam.py | 100 -------------
sdk/pam/arvados_pam/__init__.py | 51 +++++++
sdk/pam/arvados_pam/auth_event.py | 88 +++++++++++
sdk/pam/debian/arvados_pam | 10 --
sdk/pam/debian/shellinabox | 136 -----------------
sdk/pam/examples/shellinabox | 27 ++++
sdk/pam/fpm-info.sh | 15 ++
sdk/{cwl => pam}/gittaggers.py | 0
.../pam/integration_tests}/__init__.py | 0
sdk/pam/integration_tests/test_pam.py | 26 ++++
sdk/pam/lib/libpam_arvados.py | 1 +
sdk/pam/pam-configs/arvados | 14 ++
sdk/pam/setup.py | 46 ++++++
.../performance => sdk/pam/tests}/__init__.py | 0
sdk/pam/tests/integration_test.pl | 46 ++++++
sdk/pam/tests/mocker.py | 59 ++++++++
sdk/pam/tests/test_auth_event.py | 95 ++++++++++++
sdk/pam/tests/test_pam_sm.py | 26 ++++
sdk/python/arvados/arvfile.py | 4 +-
sdk/python/arvados/commands/arv_copy.py | 41 +++--
sdk/python/arvados/keep.py | 5 +-
sdk/python/arvados/retry.py | 3 +-
sdk/python/fpm-info.sh | 8 +
sdk/python/tests/test_retry.py | 6 +-
sdk/python/tests/test_websockets.py | 136 ++++++++---------
.../arvados/v1/virtual_machines_controller.rb | 18 ++-
services/api/lib/salvage_collection.rb | 94 ++++++++++++
services/api/script/salvage_collection.rb | 26 ++++
services/api/test/fixtures/humans.yml | 1 +
.../arvados/v1/virtual_machines_controller_test.rb | 7 +
services/api/test/unit/salvage_collection_test.rb | 165 +++++++++++++++++++++
services/arv-git-httpd/auth_handler.go | 87 +++++------
services/arv-git-httpd/doc.go | 26 ++--
services/arv-git-httpd/git_handler.go | 59 ++++++++
services/arv-git-httpd/git_handler_test.go | 56 +++++++
services/arv-git-httpd/main.go | 2 +-
services/arv-git-httpd/server.go | 98 +-----------
services/arv-git-httpd/server_test.go | 35 ++++-
services/keepstore/bufferpool_test.go | 5 +
services/keepstore/handlers.go | 26 +++-
services/keepstore/perms_test.go | 2 +-
services/keepstore/pull_worker.go | 1 +
services/keepstore/pull_worker_integration_test.go | 6 +-
services/keepstore/pull_worker_test.go | 48 +++---
services/keepstore/status_test.go | 21 +++
services/keepstore/trash_worker.go | 1 +
services/keepstore/trash_worker_test.go | 30 +++-
services/keepstore/volume_test.go | 21 ++-
services/keepstore/volume_unix.go | 72 ++++++---
services/keepstore/volume_unix_test.go | 41 ++++-
services/keepstore/work_queue.go | 148 +++++++++++-------
services/keepstore/work_queue_test.go | 147 ++++++++++++++----
{sdk/ruby => services/login-sync}/.gitignore | 2 +-
services/login-sync/Gemfile | 7 +
{sdk/ruby => services/login-sync}/Rakefile | 0
.../login-sync/arvados-login-sync.gemspec | 18 +--
services/login-sync/bin/arvados-login-sync | 111 ++++++++++++++
services/login-sync/test/binstub_new_user/useradd | 9 ++
services/login-sync/test/stubs.rb | 52 +++++++
services/login-sync/test/test_add_user.rb | 37 +++++
services/nodemanager/bin/arvados-node-manager | 0
112 files changed, 2750 insertions(+), 1002 deletions(-)
create mode 100644 backports/python-llfuse/fpm-info.sh
create mode 100644 backports/python-pycurl/fpm-info.sh
create mode 100644 doc/_includes/_install_git.liquid
create mode 100644 doc/_includes/_tutorial_git_repo_expectations.liquid
create mode 100644 doc/install/copy_pipeline_from_curoverse.html.textile.liquid
create mode 100644 doc/user/tutorials/git-arvados-guide.html.textile.liquid
create mode 100644 sdk/go/arvadosclient/pool.go
create mode 100644 sdk/go/auth/auth.go
rename {services/arv-git-httpd => sdk/go/auth}/basic_auth_go13.go (97%)
rename {services/arv-git-httpd => sdk/go/auth}/basic_auth_go14.go (91%)
rename {services/arv-git-httpd => sdk/go/auth}/basic_auth_test.go (98%)
copy services/arv-git-httpd/server.go => sdk/go/httpserver/httpserver.go (56%)
create mode 100644 sdk/go/httpserver/log.go
create mode 100644 sdk/go/httpserver/responsewriter.go
create mode 100644 sdk/pam/.dockerignore
copy sdk/{cwl => pam}/.gitignore (100%)
create mode 100644 sdk/pam/Dockerfile
create mode 100644 sdk/pam/MANIFEST.in
create mode 100644 sdk/pam/README.rst
delete mode 100644 sdk/pam/arvados_pam.py
create mode 100644 sdk/pam/arvados_pam/__init__.py
create mode 100644 sdk/pam/arvados_pam/auth_event.py
delete mode 100644 sdk/pam/debian/arvados_pam
delete mode 100644 sdk/pam/debian/shellinabox
create mode 100644 sdk/pam/examples/shellinabox
create mode 100644 sdk/pam/fpm-info.sh
copy sdk/{cwl => pam}/gittaggers.py (100%)
copy {services/fuse/tests/performance => sdk/pam/integration_tests}/__init__.py (100%)
create mode 100644 sdk/pam/integration_tests/test_pam.py
create mode 100644 sdk/pam/lib/libpam_arvados.py
create mode 100644 sdk/pam/pam-configs/arvados
create mode 100755 sdk/pam/setup.py
copy {services/fuse/tests/performance => sdk/pam/tests}/__init__.py (100%)
create mode 100755 sdk/pam/tests/integration_test.pl
create mode 100644 sdk/pam/tests/mocker.py
create mode 100644 sdk/pam/tests/test_auth_event.py
create mode 100644 sdk/pam/tests/test_pam_sm.py
create mode 100644 sdk/python/fpm-info.sh
create mode 100755 services/api/lib/salvage_collection.rb
create mode 100755 services/api/script/salvage_collection.rb
create mode 100644 services/api/test/fixtures/humans.yml
create mode 100644 services/api/test/unit/salvage_collection_test.rb
create mode 100644 services/arv-git-httpd/git_handler.go
create mode 100644 services/arv-git-httpd/git_handler_test.go
create mode 100644 services/keepstore/status_test.go
copy {sdk/ruby => services/login-sync}/.gitignore (52%)
create mode 100644 services/login-sync/Gemfile
copy {sdk/ruby => services/login-sync}/Rakefile (100%)
copy sdk/ruby/arvados.gemspec => services/login-sync/arvados-login-sync.gemspec (51%)
create mode 100755 services/login-sync/bin/arvados-login-sync
create mode 100755 services/login-sync/test/binstub_new_user/useradd
create mode 100644 services/login-sync/test/stubs.rb
create mode 100644 services/login-sync/test/test_add_user.rb
mode change 100644 => 100755 services/nodemanager/bin/arvados-node-manager
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commit 29c5c69ef3c9ceadbea3085f2268bb5ed8496c04
Merge: 10b25ca 59b414f
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Fri Aug 28 10:44:32 2015 -0400
Merge branch 'master' into 6507-node-manager-azure
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