[ARVADOS] updated: e9ce5eb4546431cb445b9c9286441755c91d7739
git at public.curoverse.com
git at public.curoverse.com
Thu Aug 13 11:12:51 EDT 2015
Summary of changes:
...opy_pipeline_from_curoverse.html.textile.liquid | 4 +-
sdk/go/arvadosclient/arvadosclient.go | 158 +++++++++------------
sdk/go/arvadosclient/arvadosclient_test.go | 90 ++++++++++++
sdk/go/arvadosclient/pool.go | 52 +++++++
sdk/go/auth/auth.go | 61 ++++++++
.../go/auth}/basic_auth_go13.go | 2 +-
.../go/auth}/basic_auth_go14.go | 2 +-
.../go/auth}/basic_auth_test.go | 2 +-
.../server.go => sdk/go/httpserver/httpserver.go | 56 +++-----
sdk/go/httpserver/log.go | 24 ++++
sdk/go/httpserver/responsewriter.go | 43 ++++++
sdk/go/keepclient/hashcheck.go | 24 ++--
sdk/go/keepclient/support.go | 1 -
sdk/pam/.dockerignore | 6 +
sdk/{cwl => pam}/.gitignore | 0
sdk/pam/Dockerfile | 52 +++++++
sdk/pam/MANIFEST.in | 3 +
sdk/pam/README.rst | 21 +++
sdk/pam/arvados_pam.py | 100 -------------
sdk/pam/arvados_pam/__init__.py | 51 +++++++
sdk/pam/arvados_pam/auth_event.py | 88 ++++++++++++
sdk/pam/debian/arvados_pam | 10 --
sdk/pam/debian/shellinabox | 136 ------------------
sdk/pam/examples/etc_pam.d_arvados-pam-test | 3 +
sdk/pam/examples/etc_pam.d_shellinabox | 25 ++++
sdk/pam/fpm-info.sh | 17 +++
sdk/{cwl => pam}/gittaggers.py | 0
.../pam/integration_tests}/__init__.py | 0
sdk/pam/integration_tests/test_pam.py | 26 ++++
sdk/pam/lib/libpam_arvados.py | 1 +
sdk/pam/pam-configs/arvados | 14 ++
sdk/pam/setup.py | 45 ++++++
.../performance => sdk/pam/tests}/__init__.py | 0
sdk/pam/tests/integration_test.pl | 46 ++++++
sdk/pam/tests/mocker.py | 59 ++++++++
sdk/pam/tests/test_auth_event.py | 95 +++++++++++++
sdk/pam/tests/test_pam_sm.py | 26 ++++
services/arv-git-httpd/auth_handler.go | 70 +++------
services/arv-git-httpd/server.go | 85 +----------
services/arv-git-httpd/server_test.go | 4 +
services/nodemanager/bin/arvados-node-manager | 0
41 files changed, 980 insertions(+), 522 deletions(-)
create mode 100644 sdk/go/arvadosclient/pool.go
create mode 100644 sdk/go/auth/auth.go
rename {services/arv-git-httpd => sdk/go/auth}/basic_auth_go13.go (97%)
rename {services/arv-git-httpd => sdk/go/auth}/basic_auth_go14.go (91%)
rename {services/arv-git-httpd => sdk/go/auth}/basic_auth_test.go (98%)
copy services/arv-git-httpd/server.go => sdk/go/httpserver/httpserver.go (56%)
create mode 100644 sdk/go/httpserver/log.go
create mode 100644 sdk/go/httpserver/responsewriter.go
create mode 100644 sdk/pam/.dockerignore
copy sdk/{cwl => pam}/.gitignore (100%)
create mode 100644 sdk/pam/Dockerfile
create mode 100644 sdk/pam/MANIFEST.in
create mode 100644 sdk/pam/README.rst
delete mode 100644 sdk/pam/arvados_pam.py
create mode 100644 sdk/pam/arvados_pam/__init__.py
create mode 100644 sdk/pam/arvados_pam/auth_event.py
delete mode 100644 sdk/pam/debian/arvados_pam
delete mode 100644 sdk/pam/debian/shellinabox
create mode 100644 sdk/pam/examples/etc_pam.d_arvados-pam-test
create mode 100644 sdk/pam/examples/etc_pam.d_shellinabox
create mode 100644 sdk/pam/fpm-info.sh
copy sdk/{cwl => pam}/gittaggers.py (100%)
copy {services/fuse/tests/performance => sdk/pam/integration_tests}/__init__.py (100%)
create mode 100644 sdk/pam/integration_tests/test_pam.py
create mode 100644 sdk/pam/lib/libpam_arvados.py
create mode 100644 sdk/pam/pam-configs/arvados
create mode 100755 sdk/pam/setup.py
copy {services/fuse/tests/performance => sdk/pam/tests}/__init__.py (100%)
create mode 100755 sdk/pam/tests/integration_test.pl
create mode 100644 sdk/pam/tests/mocker.py
create mode 100644 sdk/pam/tests/test_auth_event.py
create mode 100644 sdk/pam/tests/test_pam_sm.py
mode change 100644 => 100755 services/nodemanager/bin/arvados-node-manager
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commit e9ce5eb4546431cb445b9c9286441755c91d7739
Author: radhika <radhika at curoverse.com>
Date: Thu Aug 13 11:12:32 2015 -0400
6572: minor section title updates
diff --git a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
index bf3a5b0..fce6605 100644
--- a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
+++ b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
@@ -26,7 +26,7 @@ We will use the Arvados *arv-copy* command to copy this template to your cluster
During this setup, if you have an account in Curoverse cloud, you can use "your access token":#using-your-token to create the source configuration file. If you do not have an account in Curoverse cloud, you can use the "anonymous access token":#using-anonymous-token for the source cluster configuration.
-h4(#using-anonymous-token). *Configure source and destination while using anonymous access token for source*
+h4(#using-anonymous-token). *Configuring source and destination setup files using anonymous access token*
Configure the source and destination clusters as described in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html tutorial in user guide, while using *5vqmz9mik2ou2k9objb8pnyce8t97p6vocyaouqo3qalvpmjs5* as the API token for source configuration.
@@ -46,7 +46,7 @@ You can now copy the pipeline template from *qr1hi* to *your cluster*. Replace *
*Note:* When you are using anonymous access token to copy the template, you will not be able to do a recursive copy since you will not be able to provide the dst-git-repo parameter. In order to perform a recursive copy of the template, you would need to use the Arvados API token from your account as explained in the "using your token":#using-your-token section below.
-h4(#using-your-token). *Configuring using your access tokens*
+h4(#using-your-token). *Configuring source and destination setup files using personal access token*
If you already have an account in Curoverse cloud, you can follow the instructions in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html user guide to get your *Current token* for source and destination clusters, and use them to create the source *qr1hi.conf* and dst_cluster.conf configuration files.
commit a70f39f361c3c60018b90f02af64525534025e09
Merge: d07162c f96550c
Author: radhika <radhika at curoverse.com>
Date: Thu Aug 13 11:09:56 2015 -0400
Merge branch 'master' into 6572-doc-copy-pipeline
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