[ARVADOS] updated: 2a77960071b74d33fcca8bf8a8be495320e564e2
git at public.curoverse.com
git at public.curoverse.com
Tue Aug 11 12:14:12 EDT 2015
Summary of changes:
...opy_pipeline_from_curoverse.html.textile.liquid | 18 +++++------
.../install-crunch-dispatch.html.textile.liquid | 36 +++++++++++-----------
doc/install/install-keepproxy.html.textile.liquid | 11 +++++--
.../running-external-program.html.textile.liquid | 10 ++++++
services/arv-git-httpd/auth_handler.go | 16 +++++++++-
services/arv-git-httpd/server_test.go | 29 +++++++++++++++++
6 files changed, 89 insertions(+), 31 deletions(-)
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commit 2a77960071b74d33fcca8bf8a8be495320e564e2
Author: radhika <radhika at curoverse.com>
Date: Tue Aug 11 12:13:36 2015 -0400
6572: update to make it clear that the user can access anonymous token to use arv-copy.
diff --git a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
index 944989a..bf3a5b0 100644
--- a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
+++ b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
@@ -8,11 +8,11 @@ This tutorial describes how to find and copy a publicly shared pipeline from Cur
h3. Access a public pipeline in Curoverse cloud using Workbench
-Curoverse cloud provides access to some public data, which can be used to experience Arvados in action. Let's access one such public pipeline and copy to your cluster so that you can run it in your environment.
+Curoverse cloud provides access to some public data, which can be used to experience Arvados in action. Let's access a public pipeline and copy it to your cluster, so that you can run it in your environment.
Start by visiting the "*Curoverse public projects page*":https://cloud.curoverse.com/projects/public. This page lists all the publicly accessible projects in this arvados installation. Click on one of these projects to open it. We will use "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq as the example in this tutorial.
-Once in the "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq project, click on the *Pipeline templates* tab. In the pipeline templates tab, you will see a template named *lobSTR v.3*. Click on the <span class="fa fa-lg fa-gears"></span> *Show* button to the left of this name. This will take to you to the "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu template page.
+Once in the "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq project, click on the *Pipeline templates* tab. In the pipeline templates tab, you will see a template named *lobSTR v.3*. Click on the <span class="fa fa-lg fa-gears"></span> *Show* button to the left of this name. This will take to you to the "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu template page.
Once in this page, you can take the *uuid* of this template from the address bar, which is *qr1hi-p5p6p-9pkaxt6qjnkxhhu*. Next, we will copy this template to your Arvados instance.
@@ -20,15 +20,15 @@ h3. Copying a pipeline template from Curoverse cloud to your cluster
As described above, navigate to the publicly shared pipeline template "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu using Curoverse Workbench. We will now copy this template with uuid *qr1hi-p5p6p-9pkaxt6qjnkxhhu* to your cluster.
-We will use the Arvados *arv-copy* command to copy this template to your cluster as described in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html tutorial in user guide.
-
{% include 'tutorial_expectations' %}
-Configure the source and destination clusters as described in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html tutorial in user guide. Here, your Arvados instance would be the *dst_cluster* and *qr1hi* would be the source cluster. During this configuration, if you have an account in Curoverse cloud, you can use your Arvados API token. On the other hand, if you do not have an account in the Curoverse cloud, you can use the anonymous access token.
+We will use the Arvados *arv-copy* command to copy this template to your cluster. In order to use arv-copy, first you need to setup the source and destination cluster configuration files. Here, *qr1hi* would be the source cluster and your Arvados instance would be the *dst_cluster*.
+
+During this setup, if you have an account in Curoverse cloud, you can use "your access token":#using-your-token to create the source configuration file. If you do not have an account in Curoverse cloud, you can use the "anonymous access token":#using-anonymous-token for the source cluster configuration.
-h4(#using-anonymous-token). *Configuring the source using anonymous access token*
+h4(#using-anonymous-token). *Configure source and destination while using anonymous access token for source*
-If you would like to copy the template using anonymous access token, use *5vqmz9mik2ou2k9objb8pnyce8t97p6vocyaouqo3qalvpmjs5* as the token.
+Configure the source and destination clusters as described in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html tutorial in user guide, while using *5vqmz9mik2ou2k9objb8pnyce8t97p6vocyaouqo3qalvpmjs5* as the API token for source configuration.
<notextile>
<pre><code>~$ <span class="userinput">cd ~/.config/arvados</span>
@@ -46,9 +46,9 @@ You can now copy the pipeline template from *qr1hi* to *your cluster*. Replace *
*Note:* When you are using anonymous access token to copy the template, you will not be able to do a recursive copy since you will not be able to provide the dst-git-repo parameter. In order to perform a recursive copy of the template, you would need to use the Arvados API token from your account as explained in the "using your token":#using-your-token section below.
-h4(#using-your-token). *Configuring the source using your account access token*
+h4(#using-your-token). *Configuring using your access tokens*
-If you already have an account in Curoverse cloud, you can follow the instructions in the "*arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html user guide to get your *Current token* and use it to create the source *qr1hi.conf* configuration file.
+If you already have an account in Curoverse cloud, you can follow the instructions in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html user guide to get your *Current token* for source and destination clusters, and use them to create the source *qr1hi.conf* and dst_cluster.conf configuration files.
You can now copy the pipeline template from *qr1hi* to *your cluster* with or without recursion. Replace *dst_cluster* with the *uuid_prefix* of your cluster.
commit 68287acb04a459bb6d9410dd619c5b3b00631a15
Merge: c009ae5 522404b
Author: radhika <radhika at curoverse.com>
Date: Tue Aug 11 10:47:02 2015 -0400
Merge branch 'master' into 6572-doc-copy-pipeline
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