[ARVADOS] updated: c009ae5d372cce86b055aacff479712333baa413

[git at public.curoverse.com]

Summary of changes:
 doc/_config.yml                                    |  2 +
 ...opy_pipeline_from_curoverse.html.textile.liquid | 63 ++++++++++++++++++++++
 2 files changed, 65 insertions(+)
 create mode 100644 doc/install/copy_pipeline_from_curoverse.html.textile.liquid

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commit c009ae5d372cce86b055aacff479712333baa413
Author: radhika <radhika at curoverse.com>
Date:   Mon Aug 10 11:25:02 2015 -0400

    6572: add a new page in install guide to "copy a pipeline template from Curoverse cloud" using arv-copy.

diff --git a/doc/_config.yml b/doc/_config.yml
index 3cd354b..dfff6d0 100644
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -158,4 +158,6 @@ navbar:
       - install/install-keepproxy.html.textile.liquid
       - install/install-crunch-dispatch.html.textile.liquid
       - install/install-compute-node.html.textile.liquid
+    - Helpful hints:
+      - install/copy_pipeline_from_curoverse.html.textile.liquid
       - install/cheat_sheet.html.textile.liquid
diff --git a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
new file mode 100644
index 0000000..944989a
--- /dev/null
+++ b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
@@ -0,0 +1,63 @@
+---
+layout: default
+navsection: installguide
+title: Copy pipeline from Curoverse cloud
+...
+
+This tutorial describes how to find and copy a publicly shared pipeline from Curoverse cloud. Please note that you can use similar steps to copy any template you can access from Curoverse cloud to your cluster.
+
+h3. Access a public pipeline in Curoverse cloud using Workbench
+
+Curoverse cloud provides access to some public data, which can be used to experience Arvados in action. Let's access one such public pipeline and copy to your cluster so that you can run it in your environment.
+
+Start by visiting the "*Curoverse public projects page*":https://cloud.curoverse.com/projects/public. This page lists all the publicly accessible projects in this arvados installation. Click on one of these projects to open it. We will use "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq as the example in this tutorial.
+
+Once in the "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq project, click on the *Pipeline templates* tab. In the pipeline templates tab, you will see a template named *lobSTR v.3*. Click on the <span class="fa fa-lg fa-gears"></span> *Show* button to the left of this name. This will take to you to the "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu template page. 
+
+Once in this page, you can take the *uuid* of this template from the address bar, which is *qr1hi-p5p6p-9pkaxt6qjnkxhhu*. Next, we will copy this template to your Arvados instance.
+
+h3. Copying a pipeline template from Curoverse cloud to your cluster
+
+As described above, navigate to the publicly shared pipeline template "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu using Curoverse Workbench.  We will now copy this template with uuid *qr1hi-p5p6p-9pkaxt6qjnkxhhu* to your cluster.
+
+We will use the Arvados *arv-copy* command to copy this template to your cluster as described in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html tutorial in user guide.
+
+{% include 'tutorial_expectations' %}
+
+Configure the source and destination clusters as described in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html tutorial in user guide. Here, your Arvados instance would be the *dst_cluster* and *qr1hi* would be the source cluster. During this configuration, if you have an account in Curoverse cloud, you can use your Arvados API token. On the other hand, if you do not have an account in the Curoverse cloud, you can use the anonymous access token.
+
+h4(#using-anonymous-token). *Configuring the source using anonymous access token*
+
+If you would like to copy the template using anonymous access token, use *5vqmz9mik2ou2k9objb8pnyce8t97p6vocyaouqo3qalvpmjs5* as the token.
+
+<notextile>
+<pre><code>~$ <span class="userinput">cd ~/.config/arvados</span>
+~$ <span class="userinput">echo "ARVADOS_API_HOST=qr1hi.arvadosapi.com" >> qr1hi.conf</span>
+~$ <span class="userinput">echo "ARVADOS_API_TOKEN=5vqmz9mik2ou2k9objb8pnyce8t97p6vocyaouqo3qalvpmjs5" >> qr1hi.conf</span>
+</code></pre>
+</notextile>
+
+You can now copy the pipeline template from *qr1hi* to *your cluster*. Replace *dst_cluster* with the *uuid_prefix* of your cluster.
+
+<notextile>
+<pre><code>~$ <span class="userinput"> arv-copy --no-recursive --src qr1hi --dst dst_cluster qr1hi-p5p6p-9pkaxt6qjnkxhhu</span>
+</code></pre>
+</notextile>
+
+*Note:* When you are using anonymous access token to copy the template, you will not be able to do a recursive copy since you will not be able to provide the dst-git-repo parameter. In order to perform a recursive copy of the template, you would need to use the Arvados API token from your account as explained in the "using your token":#using-your-token section below.
+
+h4(#using-your-token). *Configuring the source using your account access token*
+
+If you already have an account in Curoverse cloud, you can follow the instructions in the "*arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html user guide to get your *Current token* and use it to create the source *qr1hi.conf* configuration file.
+
+You can now copy the pipeline template from *qr1hi* to *your cluster* with or without recursion. Replace *dst_cluster* with the *uuid_prefix* of your cluster.
+
+*Non-recursive copy:*
+<notextile>
+<pre><code>~$ <span class="userinput"> arv-copy --no-recursive --src qr1hi --dst dst_cluster qr1hi-p5p6p-9pkaxt6qjnkxhhu</span></code></pre>
+</notextile>
+
+*Recursive copy:*
+<notextile>
+<pre><code>~$ <span class="userinput">arv-copy --src qr1hi --dst dst_cluster --dst-git-repo $USER/tutorial qr1hi-p5p6p-9pkaxt6qjnkxhhu</span></code></pre>
+</notextile>

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