[ARVADOS] updated: 8e4ed0edeadc4dfcc85666ef5c36619815dca8e2
git at public.curoverse.com
git at public.curoverse.com
Wed Apr 8 10:52:12 EDT 2015
Summary of changes:
.../app/assets/javascripts/add_repository.js | 38 +++
.../views/application/_selection_checkbox.html.erb | 1 +
.../app/views/collections/_show_files.html.erb | 1 +
apps/workbench/app/views/layouts/body.html.erb | 19 ++
.../app/views/users/_add_repository_modal.html.erb | 41 ++++
.../app/views/users/_manage_account.html.erb | 56 +----
.../app/views/users/_manage_current_token.html.erb | 12 +
.../app/views/users/_manage_repositories.html.erb | 19 +-
.../app/views/users/_manage_ssh_keys.html.erb | 17 +-
.../views/users/_manage_virtual_machines.html.erb | 12 +-
.../test/integration/anonymous_access_test.rb | 13 +
.../test/integration/application_layout_test.rb | 2 +
.../test/integration/user_manage_account_test.rb | 10 +
apps/workbench/test/integration/users_test.rb | 21 +-
doc/_includes/_tutorial_submit_job.liquid | 2 +-
doc/api/methods/jobs.html.textile.liquid | 14 +-
.../schema/PipelineTemplate.html.textile.liquid | 16 +-
doc/api/schema/Repository.html.textile.liquid | 6 +-
doc/install/install-docker.html.textile.liquid | 112 ++++++---
doc/install/pre-built-docker.html.textile.liquid | 48 +++-
.../topics/tutorial-parallel.html.textile.liquid | 2 +-
.../tutorial-submit-job.html.textile.liquid | 6 +-
docker/api/.gitolite.rc | 191 +++++++++++++++
docker/api/Dockerfile | 16 +-
docker/api/application.yml.in | 5 +
docker/api/munge.sh | 3 +
docker/api/passenger.sh | 7 +
docker/api/setup-gitolite.sh.in | 5 +-
docker/api/setup.sh.in | 54 +++--
docker/api/supervisor.conf | 7 +-
docker/api/update-gitolite.rb | 252 +++++++++++++-------
docker/arvdock | 70 ++++--
docker/base/Dockerfile | 2 +-
docker/compute/Dockerfile | 1 +
docker/compute/munge.sh | 3 +
docker/compute/setup.sh.in | 23 +-
docker/compute/supervisor.conf | 3 +-
docker/postgresql/Dockerfile | 2 +-
sdk/cli/bin/crunch-job | 34 ++-
sdk/python/arvados/_ranges.py | 9 +-
sdk/python/arvados/arvfile.py | 2 +-
sdk/python/arvados/commands/arv_copy.py | 98 ++++----
sdk/python/arvados/util.py | 4 +-
sdk/python/tests/test_stream.py | 2 +-
sdk/ruby/arvados.gemspec | 2 +-
.../app/controllers/arvados/v1/users_controller.rb | 21 +-
services/api/app/models/arvados_model.rb | 9 +-
services/api/app/models/commit.rb | 28 +--
services/api/app/models/repository.rb | 80 ++++++-
services/api/app/models/user.rb | 31 ++-
services/api/config/application.default.yml | 5 +
...backward_compatibility_for_user_repositories.rb | 89 +++++++
services/api/db/structure.sql | 8 +-
services/api/script/crunch-dispatch.rb | 32 ++-
.../api/script/migrate-gitolite-to-uuid-storage.rb | 220 +++++++++++++++++
.../test/fixtures/api_client_authorizations.yml | 6 +
services/api/test/fixtures/jobs.yml | 30 +--
services/api/test/fixtures/repositories.yml | 17 +-
services/api/test/fixtures/users.yml | 1 +
.../arvados/v1/commits_controller_test.rb | 8 +-
.../arvados/v1/job_reuse_controller_test.rb | 56 ++---
.../functional/arvados/v1/jobs_controller_test.rb | 4 +-
.../arvados/v1/repositories_controller_test.rb | 32 +++
.../functional/arvados/v1/users_controller_test.rb | 51 ++--
.../api/test/integration/crunch_dispatch_test.rb | 2 +-
.../test/integration/serialized_encoding_test.rb | 2 +-
services/api/test/integration/users_test.rb | 21 +-
services/api/test/test.git.tar | Bin 194560 -> 194560 bytes
services/api/test/test_helper.rb | 19 ++
services/api/test/unit/job_test.rb | 2 +-
services/api/test/unit/permission_test.rb | 14 --
services/api/test/unit/repository_test.rb | 262 ++++++++++++++++++++-
services/api/test/unit/user_test.rb | 68 ++++--
services/arv-git-httpd/auth_handler.go | 69 +++---
services/arv-git-httpd/server_test.go | 26 +-
75 files changed, 1899 insertions(+), 577 deletions(-)
create mode 100644 apps/workbench/app/assets/javascripts/add_repository.js
create mode 100644 apps/workbench/app/views/users/_add_repository_modal.html.erb
create mode 100644 docker/api/.gitolite.rc
create mode 100755 docker/api/munge.sh
create mode 100755 docker/api/passenger.sh
create mode 100755 docker/compute/munge.sh
create mode 100644 services/api/db/migrate/20150324152204_backward_compatibility_for_user_repositories.rb
create mode 100755 services/api/script/migrate-gitolite-to-uuid-storage.rb
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Those revisions listed above that are new to this repository have
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commit 8e4ed0edeadc4dfcc85666ef5c36619815dca8e2
Merge: 50843fc e009f03
Author: Radhika Chippada <radhika at curoverse.com>
Date: Wed Apr 8 10:37:01 2015 -0400
Merge branch 'master' into 5493-getting-started-modal
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