[ARVADOS] updated: 19ba184b0a37d93b5ef5679be8bcc72417887d62

[git at public.curoverse.com]

Summary of changes:
 docker/java-bwa-samtools/Dockerfile | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

       via  19ba184b0a37d93b5ef5679be8bcc72417887d62 (commit)
      from  46ad2015c1db3662a1ece565df06acbbfd7ee7ec (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 19ba184b0a37d93b5ef5679be8bcc72417887d62
Author: Ward Vandewege <ward at curoverse.com>
Date:   Tue Sep 16 16:36:03 2014 -0400

    Make sure to run apt-get update before trying to install
    openjdk-7-jre-headless into the java-bwa-samtools arvados docker image.
    
    no issue #

diff --git a/docker/java-bwa-samtools/Dockerfile b/docker/java-bwa-samtools/Dockerfile
index e10f94f..c12bf06 100644
--- a/docker/java-bwa-samtools/Dockerfile
+++ b/docker/java-bwa-samtools/Dockerfile
@@ -3,7 +3,8 @@ MAINTAINER Peter Amstutz <peter.amstutz at curoverse.com>
 
 USER root
 
-RUN apt-get install -y -q openjdk-7-jre-headless && \
+RUN apt-get update && \
+    apt-get install -y -q openjdk-7-jre-headless && \
     cd /tmp && \
     curl --location http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
     tar xjf bwa-0.7.9a.tar.bz2 && \
@@ -19,4 +20,4 @@ RUN apt-get install -y -q openjdk-7-jre-headless && \
     (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
     rm -r /tmp/samtools-0.1.19*
 
-USER crunch
\ No newline at end of file
+USER crunch

-----------------------------------------------------------------------


hooks/post-receive
--