[ARVADOS] updated: a3615da860d1d78d0ecb7e2890eea26963b5c01e
git at public.curoverse.com
git at public.curoverse.com
Tue Sep 9 15:23:08 EDT 2014
Summary of changes:
.../app/views/collections/_show_files.html.erb | 4 +
.../collections/_show_source_summary.html.erb | 5 +-
apps/workbench/config/application.default.yml | 3 +
crunch_scripts/arvados-bcbio-nextgen.py | 2 +
sdk/cli/bin/crunch-job | 24 +-
sdk/python/arvados/collection.py | 2 +-
sdk/python/arvados/commands/keepdocker.py | 149 +++++-
sdk/python/arvados/commands/put.py | 143 +++---
sdk/python/arvados/stream.py | 7 +-
sdk/python/arvados/util.py | 18 +
sdk/python/tests/test_arv_put.py | 99 +---
sdk/python/tests/test_collections.py | 10 +-
services/api/app/models/job.rb | 8 +
.../migrate/20140828141043_job_priority_fixup.rb | 11 +
services/api/db/structure.sql | 6 +-
services/api/test/fixtures/jobs.yml | 12 +-
.../functional/arvados/v1/jobs_controller_test.rb | 1 +
services/fuse/arvados_fuse/__init__.py | 550 +++++++++++++++------
services/fuse/bin/arv-mount | 70 ++-
services/fuse/tests/test_mount.py | 272 +++++-----
20 files changed, 882 insertions(+), 514 deletions(-)
create mode 100644 services/api/db/migrate/20140828141043_job_priority_fixup.rb
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commit a3615da860d1d78d0ecb7e2890eea26963b5c01e
Merge: 960925b b044016
Author: radhika <radhika at curoverse.com>
Date: Tue Sep 9 15:17:43 2014 -0400
Merge branch 'master' into 3654-combine-selections
commit 960925be39948cda7f6ff0775887ba411a4e82ea
Author: radhika <radhika at curoverse.com>
Date: Tue Sep 9 15:16:23 2014 -0400
3654: display show icon for files only when the file suffix is one of txt, gif etc. Also, fixed a bug in summary html where the collection show was failing when finished_at is not available.
diff --git a/apps/workbench/app/views/collections/_show_files.html.erb b/apps/workbench/app/views/collections/_show_files.html.erb
index c830e85..4718cb1 100644
--- a/apps/workbench/app/views/collections/_show_files.html.erb
+++ b/apps/workbench/app/views/collections/_show_files.html.erb
@@ -51,9 +51,13 @@
:title => "Include #{file_path} in your selections",
} %>
<% end %>
+
+ <% if Rails.configuration.filename_suffixes_with_view_icon.include? file_path.split('.')[-1] %>
<%= link_to(raw('<i class="fa fa-search"></i>'),
link_params.merge(disposition: 'inline'),
{title: "View #{file_path}", class: "btn btn-info btn-sm"}) %>
+ <% end %>
+
<%= link_to(raw('<i class="fa fa-download"></i>'),
link_params.merge(disposition: 'attachment'),
{title: "Download #{file_path}", class: "btn btn-info btn-sm"}) %>
diff --git a/apps/workbench/app/views/collections/_show_source_summary.html.erb b/apps/workbench/app/views/collections/_show_source_summary.html.erb
index c1336b7..ba9e9df 100644
--- a/apps/workbench/app/views/collections/_show_source_summary.html.erb
+++ b/apps/workbench/app/views/collections/_show_source_summary.html.erb
@@ -7,7 +7,10 @@
<% pipelines = PipelineInstance.filter([["components", "like", "%#{@object.uuid}%"]]).each do |pipeline| %>
<% pipeline.components.each do |cname, c| %>
<% if c[:output_uuid] == @object.uuid %>
- <b><%= cname %></b> component of pipeline <b><%= link_to_if_arvados_object(pipeline, friendly_name: true) %></b> finished at <%= c[:job][:finished_at] %>
+ <b><%= cname %></b> component of pipeline <b><%= link_to_if_arvados_object(pipeline, friendly_name: true) %></b>
+ <% if c.andand[:job].andand[:finished_at] %>
+ <b>finished at <%= c[:job][:finished_at] %></b>
+ <% end %>
<% end %>
<% end %>
<% end %>
diff --git a/apps/workbench/config/application.default.yml b/apps/workbench/config/application.default.yml
index 1be5454..893b28c 100644
--- a/apps/workbench/config/application.default.yml
+++ b/apps/workbench/config/application.default.yml
@@ -141,3 +141,6 @@ common:
issue_reporter_email_from: arvados at example.com
issue_reporter_email_to: arvados at example.com
support_email_address: arvados at example.com
+
+ # filename suffixes for which view icon would be shown in collection show page
+ filename_suffixes_with_view_icon: [txt, gif, jpeg, jpg, png, html, htm, pdf]
commit 300729d2ef4d0e7b9d86444c4a784b7e0b3beb6d
Merge: 7e3496a f467b46
Author: radhika <radhika at curoverse.com>
Date: Tue Sep 9 13:25:12 2014 -0400
Merge branch 'master' into 3654-combine-selections
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