[ARVADOS] updated: 8d324f6d853ce38ab816ce12e8557b0e47ce9c2f

[git at public.curoverse.com]

Summary of changes:
 doc/user/topics/arv-run.html.textile.liquid          |  2 +-
 doc/user/tutorials/tutorial-keep.html.textile.liquid | 10 ++++++----
 2 files changed, 7 insertions(+), 5 deletions(-)

       via  8d324f6d853ce38ab816ce12e8557b0e47ce9c2f (commit)
      from  89285c343d05bc7ceef55a46c4ebb38d9b047baf (commit)

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commit 8d324f6d853ce38ab816ce12e8557b0e47ce9c2f
Author: radhika <radhika at curoverse.com>
Date:   Tue Nov 18 14:34:57 2014 -0500

    4250: update pdh to uuid in keep tutorial

diff --git a/doc/user/topics/arv-run.html.textile.liquid b/doc/user/topics/arv-run.html.textile.liquid
index 69195d8..9854dc2 100644
--- a/doc/user/topics/arv-run.html.textile.liquid
+++ b/doc/user/topics/arv-run.html.textile.liquid
@@ -157,7 +157,7 @@ h2. Putting it all together: bwa mem
 <notextile>
 <pre>
 $ <span class="userinput">cd ~/keep/by_id/d0136bc494c21f79fc1b6a390561e6cb+2778</span>
-$ <span class="userinput">arv-run --docker-image arvados/jobs-java-bwa-samtools --script-version 3609-arv-run bwa mem ../3514b8e5da0e8d109946bc809b20a78a+5698/human_g1k_v37.fasta -- --batch-size 2 *.fastq.gz \> '$(task.uuid).sam'</span>
+$ <span class="userinput">arv-run --docker-image arvados/jobs-java-bwa-samtools bwa mem ../3514b8e5da0e8d109946bc809b20a78a+5698/human_g1k_v37.fasta -- --batch-size 2 *.fastq.gz \> '$(task.uuid).sam'</span>
  0 stderr run-command: parallelizing on input0 with items [[u'/keep/d0136bc494c21f79fc1b6a390561e6cb+2778/HWI-ST1027_129_D0THKACXX.1_1.fastq.gz', u'/keep/d0136bc494c21f79fc1b6a390561e6cb+2778/HWI-ST1027_129_D0THKACXX.1_2.fastq.gz'], [u'/keep/d0136bc494c21f79fc1b6a390561e6cb+2778/HWI-ST1027_129_D0THKACXX.2_1.fastq.gz', u'/keep/d0136bc494c21f79fc1b6a390561e6cb+2778/HWI-ST1027_129_D0THKACXX.2_2.fastq.gz']]
 [...]
  1 stderr run-command: bwa mem /keep/3514b8e5da0e8d109946bc809b20a78a+5698/human_g1k_v37.fasta /keep/d0136bc494c21f79fc1b6a390561e6cb+2778/HWI-ST1027_129_D0THKACXX.1_1.fastq.gz /keep/d0136bc494c21f79fc1b6a390561e6cb+2778/HWI-ST1027_129_D0THKACXX.1_2.fastq.gz > qr1hi-ot0gb-a4bzzyqqz4ubair.sam
diff --git a/doc/user/tutorials/tutorial-keep.html.textile.liquid b/doc/user/tutorials/tutorial-keep.html.textile.liquid
index 359c4a2..6cb0ce1 100644
--- a/doc/user/tutorials/tutorial-keep.html.textile.liquid
+++ b/doc/user/tutorials/tutorial-keep.html.textile.liquid
@@ -18,15 +18,16 @@ notextile. <div class="spaced-out">
 100  216M  100  216M    0     0  10.0M      0  0:00:21  0:00:21 --:--:-- 9361k
 </code></pre>
 </notextile>
-# Now upload the file to Keep using @arv-put@:
+# Now upload the file to Keep using @arv-put@ and you will something as follows:
 <notextile>
 <pre><code>~$ <span class="userinput">arv-put var-GS000016015-ASM.tsv.bz2</span>
 216M / 216M 100.0%
-c1bad4b39ca5a924e481008009d94e32+210
+Collection saved as ...
+qr1hi-4zz18-zu4se3zo76t526b
 </code></pre>
 </notextile>
 
-* The output value @c1bad4b39ca5a924e481008009d94e32+210@ is the Arvados collection locator that uniquely describes this file.
+* The output value @qr1hi-4zz18-zu4se3zo76t526b@ is the uuid of the Arvados collection created.
 
 Now visit the Workbench *Dashboard*.  Click on *Projects*<span class="caret"></span> dropdown menu in the top navigation menu, select your *Home* project.  Your newly uploaded collection should appear near the top of the *Data collections* tab.  The collection locator printed by @arv-put@ will appear under the *name* column.
 
@@ -49,6 +50,7 @@ If you give @arv-put@ a directory, it will recursively upload the entire directo
 ~$ <span class="userinput">echo "hello carol" > tmp/carol.txt</span>
 ~$ <span class="userinput">arv-put tmp</span>
 0M / 0M 100.0%
-887cd41e9c613463eab2f0d885c6dd96+83
+Collection saved as ...
+qr1hi-4zz18-xyhx7af7y7uwj80
 </code></pre>
 </notextile>

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