[ARVADOS] updated: f8743ac8fa1ed9dc8c7c4f7a23803ffe8721cfa6
git at public.curoverse.com
git at public.curoverse.com
Wed May 21 16:15:16 EDT 2014
Summary of changes:
apps/workbench/Gemfile | 18 +-
apps/workbench/Gemfile.lock | 147 +++---
.../api_client_authorizations.js.coffee | 3 -
.../assets/javascripts/authorized_keys.js.coffee | 3 -
.../app/assets/javascripts/collections.js | 1 -
.../app/assets/javascripts/folders.js.coffee | 3 -
.../app/assets/javascripts/groups.js.coffee | 3 -
.../app/assets/javascripts/humans.js.coffee | 3 -
.../app/assets/javascripts/job_tasks.js.coffee | 3 -
.../app/assets/javascripts/jobs.js.coffee | 3 -
.../app/assets/javascripts/keep_disks.js.coffee | 4 -
.../app/assets/javascripts/links.js.coffee | 3 -
.../app/assets/javascripts/logs.js.coffee | 3 -
.../app/assets/javascripts/nodes.js.coffee | 3 -
.../app/assets/javascripts/pipeline_instances.js | 1 -
.../javascripts/pipeline_templates.js.coffee | 3 -
.../app/assets/javascripts/repositories.js.coffee | 3 -
.../app/assets/javascripts/sessions.js.coffee | 3 -
.../app/assets/javascripts/specimens.js.coffee | 3 -
.../app/assets/javascripts/traits.js.coffee | 3 -
.../assets/javascripts/user_agreements.js.coffee | 3 -
.../app/assets/javascripts/users.js.coffee | 3 -
.../assets/javascripts/virtual_machines.js.coffee | 3 -
.../app/assets/stylesheets/collections.css.scss | 46 ++
.../app/controllers/actions_controller.rb | 2 +-
.../app/controllers/application_controller.rb | 25 +-
.../app/controllers/collections_controller.rb | 143 +++---
.../app/controllers/keep_services_controller.rb | 2 +
.../app/controllers/sessions_controller.rb | 2 +-
apps/workbench/app/controllers/users_controller.rb | 10 +-
apps/workbench/app/helpers/application_helper.rb | 13 +
.../app/helpers/arvados_api_client_helper.rb | 13 +
apps/workbench/app/models/arvados_api_client.rb | 41 +-
apps/workbench/app/models/arvados_base.rb | 60 ++-
apps/workbench/app/models/arvados_resource_list.rb | 7 +-
apps/workbench/app/models/collection.rb | 25 +-
apps/workbench/app/models/group.rb | 4 +-
.../app/models/{keep_disk.rb => keep_service.rb} | 2 +-
apps/workbench/app/models/user.rb | 26 +-
apps/workbench/app/models/user_agreement.rb | 8 +-
.../app/views/collections/_show_files.html.erb | 111 ++---
.../app/views/collections/_show_jobs.html.erb | 64 ---
.../views/collections/_show_provenance.html.erb | 84 ----
.../views/collections/_show_source_data.html.erb | 44 --
apps/workbench/app/views/collections/show.html.erb | 105 ++++
.../app/views/collections/show_file_links.html.erb | 82 +++
apps/workbench/app/views/folders/show.html.erb | 60 ++-
.../app/views/layouts/application.html.erb | 8 +-
apps/workbench/app/views/links/_recent.html.erb | 2 +-
.../pipeline_instances/_show_components.html.erb | 5 +-
.../app/views/pipeline_instances/show.js.erb | 6 +-
.../workbench/app/views/users/_show_admin.html.erb | 2 +-
apps/workbench/app/views/users/welcome.html.erb | 2 +-
apps/workbench/app/views/websocket/index.html.erb | 2 +-
apps/workbench/config/application.default.yml | 14 +-
apps/workbench/config/application.rb | 15 +-
.../config/environments/development.rb.example | 12 +-
.../config/environments/production.rb.example | 6 +-
apps/workbench/config/environments/test.rb.example | 6 -
.../config/initializers/zzz_arvados_api_client.rb | 8 -
.../zza_load_config.rb => load_config.rb} | 0
apps/workbench/config/routes.rb | 12 +-
apps/workbench/public/robots.txt | 2 -
.../test/functional/collections_controller_test.rb | 80 +--
.../workbench/test/integration/collections_test.rb | 27 +-
apps/workbench/test/integration/users_test.rb | 7 +-
apps/workbench/test/integration_helper.rb | 5 +
apps/workbench/test/test_helper.rb | 79 ++-
apps/workbench/test/unit/collection_test.rb | 27 +
.../test/unit/helpers/collections_helper_test.rb | 8 +
doc/_config.yml | 2 +
doc/api/methods/keep_services.html.textile.liquid | 75 +++
doc/api/schema/KeepDisk.html.textile.liquid | 4 +-
doc/api/schema/KeepService.html.textile.liquid | 24 +
.../install-workbench-app.html.textile.liquid | 11 +
sdk/go/src/arvados.org/keepclient/hashcheck.go | 77 +++
.../src/arvados.org/keepclient/hashcheck_test.go | 85 ++++
sdk/go/src/arvados.org/keepclient/keepclient.go | 542 +++-----------------
.../src/arvados.org/keepclient/keepclient_test.go | 555 ++++++---------------
sdk/go/src/arvados.org/keepclient/support.go | 255 ++++++++++
sdk/go/src/arvados.org/streamer/streamer.go | 130 +++++
sdk/go/src/arvados.org/streamer/streamer_test.go | 366 ++++++++++++++
sdk/go/src/arvados.org/streamer/transfer.go | 308 ++++++++++++
sdk/python/run_test_server.py | 9 +-
.../arvados/v1/collections_controller.rb | 62 ++-
.../arvados/v1/keep_services_controller.rb | 21 +
services/api/app/models/api_client.rb | 2 +-
.../api/app/models/api_client_authorization.rb | 2 +-
services/api/app/models/arvados_model.rb | 10 +-
services/api/app/models/authorized_key.rb | 2 +-
services/api/app/models/collection.rb | 2 +-
services/api/app/models/group.rb | 5 +-
services/api/app/models/human.rb | 2 +-
services/api/app/models/job.rb | 2 +-
services/api/app/models/job_task.rb | 2 +-
services/api/app/models/keep_disk.rb | 20 +-
services/api/app/models/keep_service.rb | 15 +
services/api/app/models/link.rb | 2 +-
services/api/app/models/locator.rb | 84 ++++
services/api/app/models/log.rb | 2 +-
services/api/app/models/node.rb | 2 +-
services/api/app/models/pipeline_instance.rb | 2 +-
services/api/app/models/pipeline_template.rb | 2 +-
services/api/app/models/repository.rb | 2 +-
services/api/app/models/specimen.rb | 2 +-
services/api/app/models/trait.rb | 2 +-
services/api/app/models/user.rb | 6 +-
services/api/app/models/virtual_machine.rb | 2 +-
services/api/config/application.default.yml | 5 +
services/api/config/application.yml.example | 13 +
services/api/config/initializers/assign_uuid.rb | 1 -
services/api/config/initializers/secret_token.rb | 7 -
services/api/config/routes.rb | 3 +
.../20140422011506_pipeline_instance_state.rb | 2 +
.../migrate/20140519205916_create_keep_services.rb | 51 ++
services/api/db/schema.rb | 23 +-
services/api/lib/assign_uuid.rb | 31 --
services/api/lib/can_be_an_owner.rb | 47 ++
services/api/lib/has_uuid.rb | 42 ++
.../test/fixtures/api_client_authorizations.yml | 7 +
services/api/test/fixtures/collections.yml | 21 +
services/api/test/fixtures/jobs.yml | 2 +-
services/api/test/fixtures/keep_disks.yml | 12 +-
services/api/test/fixtures/keep_services.yml | 23 +
services/api/test/fixtures/links.yml | 14 +
services/api/test/fixtures/logs.yml | 5 +
.../arvados/v1/collections_controller_test.rb | 216 ++++++++
.../arvados/v1/keep_disks_controller_test.rb | 34 +-
.../arvados/v1/keep_services_controller_test.rb | 23 +
services/api/test/integration/keep_proxy_test.rb | 25 +
services/api/test/unit/arvados_model_test.rb | 34 ++
.../api/test/unit/keep_service_test.rb | 2 +-
services/api/test/unit/link_test.rb | 14 +-
services/api/test/unit/owner_test.rb | 126 +++++
services/fuse/arvados_fuse/__init__.py | 27 +-
services/fuse/bin/arv-mount | 4 +-
services/keep/src/keep/keep.go | 30 +-
137 files changed, 3371 insertions(+), 1710 deletions(-)
delete mode 100644 apps/workbench/app/assets/javascripts/api_client_authorizations.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/authorized_keys.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/folders.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/groups.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/humans.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/job_tasks.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/jobs.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/links.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/logs.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/nodes.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/pipeline_templates.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/repositories.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/sessions.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/specimens.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/traits.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/user_agreements.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/users.js.coffee
delete mode 100644 apps/workbench/app/assets/javascripts/virtual_machines.js.coffee
create mode 100644 apps/workbench/app/controllers/keep_services_controller.rb
create mode 100644 apps/workbench/app/helpers/arvados_api_client_helper.rb
copy apps/workbench/app/models/{keep_disk.rb => keep_service.rb} (70%)
delete mode 100644 apps/workbench/app/views/collections/_show_jobs.html.erb
delete mode 100644 apps/workbench/app/views/collections/_show_provenance.html.erb
delete mode 100644 apps/workbench/app/views/collections/_show_source_data.html.erb
create mode 100644 apps/workbench/app/views/collections/show.html.erb
create mode 100644 apps/workbench/app/views/collections/show_file_links.html.erb
delete mode 100644 apps/workbench/config/initializers/zzz_arvados_api_client.rb
rename apps/workbench/config/{initializers/zza_load_config.rb => load_config.rb} (100%)
create mode 100644 doc/api/methods/keep_services.html.textile.liquid
create mode 100644 doc/api/schema/KeepService.html.textile.liquid
create mode 100644 sdk/go/src/arvados.org/keepclient/hashcheck.go
create mode 100644 sdk/go/src/arvados.org/keepclient/hashcheck_test.go
create mode 100644 sdk/go/src/arvados.org/keepclient/support.go
create mode 100644 sdk/go/src/arvados.org/streamer/streamer.go
create mode 100644 sdk/go/src/arvados.org/streamer/streamer_test.go
create mode 100644 sdk/go/src/arvados.org/streamer/transfer.go
create mode 100644 services/api/app/controllers/arvados/v1/keep_services_controller.rb
create mode 100644 services/api/app/models/keep_service.rb
create mode 100644 services/api/app/models/locator.rb
delete mode 100644 services/api/config/initializers/assign_uuid.rb
delete mode 100644 services/api/config/initializers/secret_token.rb
create mode 100644 services/api/db/migrate/20140519205916_create_keep_services.rb
delete mode 100644 services/api/lib/assign_uuid.rb
create mode 100644 services/api/lib/can_be_an_owner.rb
create mode 100644 services/api/lib/has_uuid.rb
create mode 100644 services/api/test/fixtures/keep_services.yml
create mode 100644 services/api/test/functional/arvados/v1/keep_services_controller_test.rb
create mode 100644 services/api/test/integration/keep_proxy_test.rb
create mode 100644 services/api/test/unit/arvados_model_test.rb
copy apps/workbench/test/unit/job_task_test.rb => services/api/test/unit/keep_service_test.rb (61%)
create mode 100644 services/api/test/unit/owner_test.rb
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commit f8743ac8fa1ed9dc8c7c4f7a23803ffe8721cfa6
Merge: cd85fc2 3ba5aa1
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Wed May 21 16:14:03 2014 -0400
Merge branch '2798-go-keep-client' into 1885-keep-proxy
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