[ARVADOS] updated: 9c78924f523b5420a21fe5c7eba0f913de4c4d69
git at public.curoverse.com
git at public.curoverse.com
Thu Mar 27 12:01:47 EDT 2014
Summary of changes:
.../pipeline_instances/_show_components.html.erb | 10 +
.../workbench/app/views/users/_show_admin.html.erb | 2 +-
apps/workbench/app/views/users/_tables.html.erb | 10 +-
apps/workbench/doc/README_FOR_APP | 2 -
apps/workbench/test/integration/logins_test.rb | 2 +-
doc/README.textile | 6 +
doc/_config.yml | 7 +
doc/_includes/_webring.liquid | 6 +-
doc/api/schema/ApiClient.html.textile.liquid | 4 +-
.../ApiClientAuthorization.html.textile.liquid | 2 +-
doc/api/schema/AuthorizedKey.html.textile.liquid | 5 +-
doc/api/schema/Collection.html.textile.liquid | 6 +-
doc/api/schema/Commit.html.textile.liquid | 4 +-
doc/api/schema/CommitAncestor.html.textile.liquid | 4 +-
doc/api/schema/Group.html.textile.liquid | 4 +-
doc/api/schema/Human.html.textile.liquid | 4 +-
doc/api/schema/Job.html.textile.liquid | 6 +-
doc/api/schema/JobTask.html.textile.liquid | 4 +-
doc/api/schema/KeepDisk.html.textile.liquid | 4 +-
doc/api/schema/Link.html.textile.liquid | 4 +-
doc/api/schema/Log.html.textile.liquid | 4 +-
doc/api/schema/Node.html.textile.liquid | 4 +-
.../schema/PipelineInstance.html.textile.liquid | 4 +-
.../schema/PipelineTemplate.html.textile.liquid | 4 +-
doc/api/schema/Repository.html.textile.liquid | 4 +-
doc/api/schema/Specimen.html.textile.liquid | 4 +-
doc/api/schema/Trait.html.textile.liquid | 4 +-
doc/api/schema/User.html.textile.liquid | 4 +-
doc/api/schema/VirtualMachine.html.textile.liquid | 4 +-
doc/gen_api_schema_docs.py | 3 +-
doc/index.html.liquid | 2 +-
doc/sdk/cli/index.html.textile.liquid | 61 ++++++
doc/sdk/index.html.textile.liquid | 10 +-
doc/sdk/perl/index.html.textile.liquid | 99 +++++++++
doc/sdk/ruby/index.html.textile.liquid | 125 +++++++++++
doc/user/copying/agpl-3.0.html | 2 +-
.../job-and-pipeline-reference.html.textile.liquid | 223 ++++++++++++++++++++
doc/user/topics/keep.html.textile.liquid | 2 +-
...nning-pipeline-command-line.html.textile.liquid | 7 +-
...rial-gatk-variantfiltration.html.textile.liquid | 1 +
doc/user/topics/tutorial-job1.html.textile.liquid | 15 +-
.../topics/tutorial-parallel.html.textile.liquid | 3 +-
.../running-external-program.html.textile.liquid | 5 +-
.../tutorial-firstscript.html.textile.liquid | 10 +-
.../tutorial-new-pipeline.html.textile.liquid | 9 +-
...tutorial-pipeline-workbench.html.textile.liquid | 4 +-
sdk/cli/bin/arv-run-pipeline-instance | 103 ++-------
.../app/controllers/arvados/v1/jobs_controller.rb | 73 ++++---
.../controllers/arvados/v1/schema_controller.rb | 2 +-
services/api/app/models/commit.rb | 122 +++++++++---
services/api/app/models/job.rb | 9 +-
services/api/config/application.default.yml | 12 +-
services/api/config/application.yml.example | 7 +-
services/api/config/environment.rb | 1 +
...317135600_add_nondeterministic_column_to_job.rb | 9 +
...0547_separate_repository_from_script_version.rb | 31 +++
.../20140321191343_add_repository_column_to_job.rb | 9 +
services/api/db/schema.rb | 28 ++--
services/api/script/crunch-dispatch.rb | 55 +++--
services/api/script/rails | 4 +-
services/api/test/fixtures/collections.yml | 2 +-
services/api/test/fixtures/jobs.yml | 21 ++
services/api/test/fixtures/links.yml | 23 ++-
services/api/test/fixtures/repositories.yml | 4 +
.../arvados/v1/commits_controller_test.rb | 86 ++++++++
.../api/test/functional/arvados/v1/git_setup.rb | 27 +++
.../arvados/v1/job_reuse_controller_test.rb | 167 +++++++++++++++
.../functional/arvados/v1/jobs_controller_test.rb | 7 +
services/api/test/test.git.tar | Bin 0 -> 112640 bytes
services/keep/keep.go | 137 ++++++++++++
services/keep/keep_test.go | 125 +++++++++++
71 files changed, 1505 insertions(+), 272 deletions(-)
delete mode 100644 apps/workbench/doc/README_FOR_APP
create mode 100644 doc/sdk/cli/index.html.textile.liquid
create mode 100644 doc/sdk/perl/index.html.textile.liquid
create mode 100644 doc/sdk/ruby/index.html.textile.liquid
create mode 100644 doc/user/reference/job-and-pipeline-reference.html.textile.liquid
create mode 100644 services/api/db/migrate/20140317135600_add_nondeterministic_column_to_job.rb
create mode 100644 services/api/db/migrate/20140319160547_separate_repository_from_script_version.rb
create mode 100644 services/api/db/migrate/20140321191343_add_repository_column_to_job.rb
create mode 100644 services/api/test/fixtures/repositories.yml
create mode 100644 services/api/test/functional/arvados/v1/commits_controller_test.rb
create mode 100644 services/api/test/functional/arvados/v1/git_setup.rb
create mode 100644 services/api/test/functional/arvados/v1/job_reuse_controller_test.rb
create mode 100644 services/api/test/test.git.tar
create mode 100644 services/keep/keep.go
create mode 100644 services/keep/keep_test.go
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commit 9c78924f523b5420a21fe5c7eba0f913de4c4d69
Author: radhika chippada <radhika at radhika.curoverse>
Date: Thu Mar 27 11:57:18 2014 -0400
Update UI to use button_to instead of link_to to deactivate the user
diff --git a/apps/workbench/app/views/users/_show_admin.html.erb b/apps/workbench/app/views/users/_show_admin.html.erb
index 0cc5f74..90afd11 100644
--- a/apps/workbench/app/views/users/_show_admin.html.erb
+++ b/apps/workbench/app/views/users/_show_admin.html.erb
@@ -9,5 +9,5 @@ account.</p>
<p>As an admin, you can deactivate and reset this user. This will remove all repository/VM permissions for the user. If you "setup" the user again, the user will have to sign the user agreement again.</p>
<blockquote>
-<%= link_to "Deactivate #{@object.full_name}", { action: 'unsetup', id: @object.uuid }, { confirm: "Are you sure you want to deactivate #{@object.full_name}?", method: 'post' } %>
+<%= button_to "Deactivate #{@object.full_name}", unsetup_user_url(id: @object.uuid), class: 'btn btn-primary', confirm: "Are you sure you want to deactivate #{@object.full_name}?"%>
</blockquote>
commit c0b66870cafce4d75625e16b5b36bed8b58d7c8e
Merge: fbb4e2d ee86983
Author: radhika chippada <radhika at radhika.curoverse>
Date: Thu Mar 27 11:44:53 2014 -0400
Merge branch 'master' into 2068-reset-user
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