[ARVADOS] updated: adea7dcb58e33e4667ae228845b6a4c1bfb920f0

git at public.curoverse.com git at public.curoverse.com
Tue Mar 11 16:26:07 EDT 2014


Summary of changes:
 doc/README                                         |   28 +++++
 doc/Rakefile                                       |    9 ++
 doc/_config.yml                                    |   22 +++-
 doc/_includes/_run_md5sum_py.liquid                |   33 ++----
 doc/_includes/_tutorial_hash_script_py.liquid      |   72 ++++-------
 doc/_includes/_webring.liquid                      |   29 +++++
 doc/_layouts/default.html.liquid                   |    8 +-
 doc/admin/cheat_sheet.html.textile.liquid          |    2 +-
 doc/api/authentication.html.textile.liquid         |    2 +-
 doc/api/index.html.textile.liquid                  |    2 +-
 doc/api/methods.html.textile.liquid                |    2 +-
 .../api_client_authorizations.html.textile.liquid  |    2 +-
 doc/api/methods/api_clients.html.textile.liquid    |    2 +-
 .../methods/authorized_keys.html.textile.liquid    |    2 +-
 doc/api/methods/collections.html.textile.liquid    |    2 +-
 doc/api/methods/groups.html.textile.liquid         |    2 +-
 doc/api/methods/humans.html.textile.liquid         |    2 +-
 doc/api/methods/job_tasks.html.textile.liquid      |    2 +-
 doc/api/methods/jobs.html.textile.liquid           |    2 +-
 doc/api/methods/keep_disks.html.textile.liquid     |    2 +-
 doc/api/methods/links.html.textile.liquid          |    2 +-
 doc/api/methods/logs.html.textile.liquid           |    2 +-
 doc/api/methods/nodes.html.textile.liquid          |    2 +-
 .../methods/pipeline_instances.html.textile.liquid |    2 +-
 .../methods/pipeline_templates.html.textile.liquid |    2 +-
 doc/api/methods/repositories.html.textile.liquid   |    2 +-
 doc/api/methods/specimens.html.textile.liquid      |    2 +-
 doc/api/methods/traits.html.textile.liquid         |    2 +-
 doc/api/methods/users.html.textile.liquid          |    2 +-
 .../methods/virtual_machines.html.textile.liquid   |    2 +-
 doc/api/permission-model.html.textile.liquid       |    2 +-
 doc/api/resources.html.textile.liquid              |    2 +-
 doc/api/schema/ApiClient.html.textile.liquid       |    2 +-
 .../ApiClientAuthorization.html.textile.liquid     |    2 +-
 doc/api/schema/AuthorizedKey.html.textile.liquid   |    2 +-
 doc/api/schema/Collection.html.textile.liquid      |    2 +-
 doc/api/schema/Commit.html.textile.liquid          |    2 +-
 doc/api/schema/CommitAncestor.html.textile.liquid  |    2 +-
 doc/api/schema/Group.html.textile.liquid           |    2 +-
 doc/api/schema/Human.html.textile.liquid           |    2 +-
 doc/api/schema/Job.html.textile.liquid             |    2 +-
 doc/api/schema/JobTask.html.textile.liquid         |    2 +-
 doc/api/schema/KeepDisk.html.textile.liquid        |    2 +-
 doc/api/schema/Link.html.textile.liquid            |    2 +-
 doc/api/schema/Log.html.textile.liquid             |    2 +-
 doc/api/schema/Node.html.textile.liquid            |    2 +-
 .../schema/PipelineInstance.html.textile.liquid    |    2 +-
 .../schema/PipelineTemplate.html.textile.liquid    |    2 +-
 doc/api/schema/Repository.html.textile.liquid      |    2 +-
 doc/api/schema/Specimen.html.textile.liquid        |    2 +-
 doc/api/schema/Trait.html.textile.liquid           |    2 +-
 doc/api/schema/User.html.textile.liquid            |    2 +-
 doc/api/schema/VirtualMachine.html.textile.liquid  |    2 +-
 doc/css/code.css                                   |   27 ++++
 doc/css/nav-list.css                               |    4 +
 doc/index.html.liquid                              |   10 +-
 doc/install/client.html.textile.liquid             |    2 +-
 .../create-standard-objects.html.textile.liquid    |    2 +-
 .../install-crunch-dispatch.html.textile.liquid    |    2 +-
 doc/sdk/index.html.textile.liquid                  |    5 +-
 .../crunch-utility-libraries.html.textile.liquid   |    2 -
 doc/sdk/python/sdk-python.html.textile.liquid      |    2 -
 .../examples/crunch-examples.html.textile.liquid   |    4 -
 .../check-environment.html.textile.liquid          |    6 -
 .../getting_started/community.html.textile.liquid  |    4 -
 .../getting_started/ssh-access.html.textile.liquid |    9 +-
 .../getting_started/workbench.html.textile.liquid  |    7 +-
 doc/user/index.html.textile.liquid                 |   18 ++--
 doc/user/reference/api-tokens.html.textile.liquid  |    6 +-
 doc/user/reference/sdk-cli.html.textile.liquid     |    3 -
 doc/user/topics/keep.html.textile.liquid           |   48 +++++++
 ...nning-pipeline-command-line.html.textile.liquid |  119 ++++++++++++++++++
 ...rial-gatk-variantfiltration.html.textile.liquid |    6 +-
 .../tutorial-job-debug.html.textile.liquid         |   17 +--
 .../tutorial-job1.html.textile.liquid              |   46 +++-----
 .../tutorial-parallel.html.textile.liquid          |   19 +--
 .../tutorial-trait-search.html.textile.liquid      |    4 -
 .../tutorials/intro-crunch.html.textile.liquid     |   17 +++
 .../running-external-program.html.textile.liquid   |   46 +++----
 .../tutorial-firstscript.html.textile.liquid       |   72 ++++++-----
 .../tutorials/tutorial-keep.html.textile.liquid    |   95 +++++++++------
 .../tutorial-new-pipeline.html.textile.liquid      |  129 ++++----------------
 ...tutorial-pipeline-workbench.html.textile.liquid |   25 ++++
 doc/zenweb-liquid.rb                               |   33 +++++-
 84 files changed, 630 insertions(+), 452 deletions(-)
 create mode 100644 doc/README
 create mode 100644 doc/_includes/_webring.liquid
 create mode 100644 doc/css/code.css
 create mode 100644 doc/user/topics/keep.html.textile.liquid
 create mode 100644 doc/user/topics/running-pipeline-command-line.html.textile.liquid
 rename doc/user/{tutorials => topics}/tutorial-gatk-variantfiltration.html.textile.liquid (98%)
 rename doc/user/{tutorials => topics}/tutorial-job-debug.html.textile.liquid (95%)
 rename doc/user/{tutorials => topics}/tutorial-job1.html.textile.liquid (74%)
 rename doc/user/{tutorials => topics}/tutorial-parallel.html.textile.liquid (71%)
 rename doc/user/{tutorials => topics}/tutorial-trait-search.html.textile.liquid (99%)
 create mode 100644 doc/user/tutorials/intro-crunch.html.textile.liquid
 create mode 100644 doc/user/tutorials/tutorial-pipeline-workbench.html.textile.liquid

       via  adea7dcb58e33e4667ae228845b6a4c1bfb920f0 (commit)
       via  e4f96fc61cd9c85f91bdb0020bc365f2f4825ffb (commit)
       via  927d11b99091dc4493446681209bec514c92f1bf (commit)
       via  8c90084189d5ddb42359688aabd57f77ae867000 (commit)
       via  4d3ece2c9b2b840a2899c03be215bf222fd52b13 (commit)
       via  0191262856619bfaaa62629cc2f0b0ef15b5b9a2 (commit)
       via  024bc6551b9d06a5fa9a8aa7c71ce1895e8a0ede (commit)
       via  9a3fd18942055b0ec78f85aad3df4bbd2cc4f548 (commit)
       via  aa961ea35ffb01f88777d8e86336627e88da725d (commit)
       via  e86868d96caea7af41140e9d3e26f40b144a0ff6 (commit)
       via  9ab861b00881ea7a5737d89b90ad17ceb264c8da (commit)
       via  fdbef7b63085492ddbc9201726508d63d0c8bf8f (commit)
       via  4638e5fd00707c755c685bf601f92d27038703f3 (commit)
       via  15dd4bd9a033b3ca45774994a84fe1bfa2226655 (commit)
       via  55d96c71c561e51e8a00974caf60123698fc0647 (commit)
       via  a0bcef395615dc00d3b14d6f33a802e789d571e4 (commit)
       via  c592425e9ce54bee52f825c1ec1d2caa665ba308 (commit)
       via  a7f378b2267ddc1b44a8661d6723264fe959d98e (commit)
       via  3fb3557b13cce8fee3bab0f81ab03b78fbef67dd (commit)
       via  005928e7cbe6abbe418588f3eb652b3dee16e544 (commit)
       via  88b5b089f38a587292bb68772251b8275c0e27c7 (commit)
       via  491f4f3023d0f45be94e5f7091da85094e887212 (commit)
       via  7791c7e1b09341ce1fed131c6b11c91da8217c3f (commit)
       via  cc414357e4eda3ed2060307f5b821385ae3d74bb (commit)
      from  3cb88fbae1bda5c16fd8120eb533c15f75f85af3 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit adea7dcb58e33e4667ae228845b6a4c1bfb920f0
Merge: e4f96fc 3cb88fb
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Mar 11 16:27:22 2014 -0400

    Merge branch 'master' of git.clinicalfuture.com:arvados
    
    # Please enter a commit message to explain why this merge is necessary,
    # especially if it merges an updated upstream into a topic branch.
    #
    # Lines starting with '#' will be ignored, and an empty message aborts
    # the commit.


commit e4f96fc61cd9c85f91bdb0020bc365f2f4825ffb
Merge: d719c22 927d11b
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Mar 11 16:26:59 2014 -0400

    Merge branch '2107-update-documentation'


-----------------------------------------------------------------------


hooks/post-receive
-- 




More information about the arvados-commits mailing list