[ARVADOS] updated: 30d63b582ed093d235ae4a9efdeda5de1d4e2f24

[git at public.curoverse.com]

Summary of changes:
 .gitignore                                         |   3 +
 .../app/controllers/application_controller.rb      |  26 +++++
 apps/workbench/app/helpers/application_helper.rb   |  11 ++-
 .../app/models/api_client_authorization.rb         |   2 +-
 apps/workbench/app/models/arvados_base.rb          |   4 +-
 apps/workbench/app/models/authorized_key.rb        |   4 +-
 apps/workbench/app/models/collection.rb            |   2 +-
 apps/workbench/app/models/job.rb                   |   2 +-
 apps/workbench/app/models/pipeline_instance.rb     |   7 +-
 apps/workbench/app/models/user.rb                  |   4 +-
 apps/workbench/app/models/virtual_machine.rb       |   2 +-
 doc/api/methods/users.html.textile.liquid          |   4 -
 ...rial-gatk-variantfiltration.html.textile.liquid |  42 +--------
 doc/user/topics/tutorial-job1.html.textile.liquid  |  12 +--
 docker/api/secret_token.rb.in                      |   5 +
 docker/build_tools/Makefile                        |   3 +-
 docker/config.yml.example                          |   4 +
 docker/jobs/Dockerfile                             |   2 +
 sdk/cli/bin/arv                                    |   2 -
 sdk/cli/bin/crunch-job                             |  31 ++++--
 services/api/Gemfile                               |   1 -
 services/api/Gemfile.lock                          |   2 -
 .../controllers/arvados/v1/groups_controller.rb    |   7 +-
 .../controllers/arvados/v1/job_tasks_controller.rb |   1 +
 .../app/controllers/arvados/v1/jobs_controller.rb  |  45 ---------
 .../app/controllers/arvados/v1/users_controller.rb |  39 +-------
 services/api/app/mailers/admin_notifier.rb         |  52 +++++-----
 services/api/app/models/job.rb                     |  19 ----
 services/api/app/models/link.rb                    |   8 ++
 services/api/app/models/user.rb                    |  10 +-
 .../admin_notifier/after_create_user.text.erb      |   7 --
 .../admin_notifier/new_inactive_user.text.erb      |  13 +++
 .../api/app/views/admin_notifier/new_user.text.erb |  16 ++++
 services/api/config/application.default.yml        |   2 +
 services/api/config/routes.rb                      |   2 -
 .../test/integration/serialized_encoding_test.rb   |  62 ++++++++----
 services/api/test/unit/user_test.rb                | 105 ++++++++++++++++-----
 services/fuse/tests/test_mount.py                  |   7 +-
 services/keep/src/keep/keep.go                     |  53 +++--------
 services/keep/src/keep/volume_unix.go              |  14 +--
 40 files changed, 325 insertions(+), 312 deletions(-)
 delete mode 100644 services/api/app/views/admin_notifier/after_create_user.text.erb
 create mode 100644 services/api/app/views/admin_notifier/new_inactive_user.text.erb
 create mode 100644 services/api/app/views/admin_notifier/new_user.text.erb

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commit 30d63b582ed093d235ae4a9efdeda5de1d4e2f24
Merge: 37301d8 06750c6
Author: radhika <radhika at curoverse.com>
Date:   Wed Jun 4 15:53:46 2014 -0400

    Merge branch 'master' into 2919-provenance-graph-cutoff


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