[ARVADOS] updated: 0e9e78ad4e32fb3a14c6e83091efdbe96f2f03d6

[git at public.curoverse.com]

Summary of changes:
 .../_show_advanced_cli_example.html.erb            |    2 +-
 .../app/views/application/_show_api.html.erb       |    2 +-
 .../app/views/authorized_keys/_show_help.html.erb  |    2 +-
 .../notifications/_ssh_key_notification.html.erb   |    2 +-
 .../app/views/repositories/_show_help.html.erb     |    2 +-
 .../app/views/virtual_machines/_show_help.html.erb |    2 +-
 doc/install/install-docker.html.textile.liquid     |   14 +
 .../topics/tutorial-job-debug.html.textile.liquid  |    5 +-
 docker/api/Dockerfile                              |   10 +-
 docker/api/apache2_foreground.sh                   |    5 -
 docker/api/passenger.conf                          |    3 -
 docker/api/ssh.sh                                  |   10 +
 docker/api/supervisor.conf                         |    5 +
 docker/arvdock                                     |    2 +-
 docker/base/Dockerfile                             |   20 +-
 docker/build_tools/Makefile                        |    9 +-
 docker/doc/Dockerfile                              |    4 +-
 docker/passenger/Dockerfile                        |    4 +-
 docker/sso/Dockerfile                              |    7 +-
 docker/sso/passenger.conf                          |    3 -
 docker/workbench/Dockerfile                        |    6 +-
 docker/workbench/passenger.conf                    |    3 -
 sdk/cli/bin/arv-run-pipeline-instance              |    6 +-
 sdk/cli/bin/crunch-job                             |   44 +-
 services/api/Gemfile                               |    2 +-
 services/api/Gemfile.lock                          |    6 +-
 .../api/app/controllers/application_controller.rb  |    8 +
 .../app/controllers/arvados/v1/jobs_controller.rb  |   80 +-
 .../app/controllers/arvados/v1/users_controller.rb |   11 +
 services/api/app/models/arvados_model.rb           |   15 +-
 services/api/app/models/commit.rb                  |    8 +-
 services/api/app/models/job_task.rb                |   12 +-
 services/api/config/application.rb                 |    1 +
 .../20140709172343_job_task_serial_qsequence.rb    |   11 +
 services/api/db/schema.rb                          |  443 -----
 services/api/db/structure.sql                      | 1974 ++++++++++++++++++++
 services/api/lib/record_filters.rb                 |   27 +-
 .../test/fixtures/api_client_authorizations.yml    |    6 +
 services/api/test/fixtures/jobs.yml                |    2 +-
 services/api/test/fixtures/links.yml               |   28 +
 services/api/test/fixtures/pipeline_templates.yml  |    2 +-
 services/api/test/fixtures/users.yml               |   10 +
 .../arvados/v1/groups_controller_test.rb           |   77 +-
 .../arvados/v1/job_reuse_controller_test.rb        |   91 +
 .../functional/arvados/v1/users_controller_test.rb |  100 +
 services/api/test/integration/jobs_api_test.rb     |   19 +
 services/api/test/integration/permissions_test.rb  |   16 +-
 services/api/test/integration/select_test.rb       |    2 +-
 services/api/test/unit/job_task_test.rb            |   15 +-
 49 files changed, 2531 insertions(+), 607 deletions(-)
 delete mode 100644 docker/api/passenger.conf
 create mode 100755 docker/api/ssh.sh
 delete mode 100644 docker/sso/passenger.conf
 delete mode 100644 docker/workbench/passenger.conf
 create mode 100644 services/api/db/migrate/20140709172343_job_task_serial_qsequence.rb
 delete mode 100644 services/api/db/schema.rb
 create mode 100644 services/api/db/structure.sql

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commit 0e9e78ad4e32fb3a14c6e83091efdbe96f2f03d6
Merge: dad21a3 76c61ff
Author: radhika <radhika at curoverse.com>
Date:   Tue Jul 15 16:16:00 2014 -0400

    Merge branch 'master' into 3106-modal-loading-indicator


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