[ARVADOS] updated: 1b4adbdc0711468971f619527cb250e8b743084b
git at public.curoverse.com
git at public.curoverse.com
Mon Jul 14 13:32:49 EDT 2014
Summary of changes:
sdk/cli/bin/crunch-job | 44 +-
services/api/app/models/job_task.rb | 12 +-
services/api/config/application.rb | 1 +
.../20140709172343_job_task_serial_qsequence.rb | 11 +
services/api/db/schema.rb | 443 -----
services/api/db/structure.sql | 1974 ++++++++++++++++++++
services/api/test/integration/jobs_api_test.rb | 19 +
services/api/test/unit/job_task_test.rb | 15 +-
8 files changed, 2044 insertions(+), 475 deletions(-)
create mode 100644 services/api/db/migrate/20140709172343_job_task_serial_qsequence.rb
delete mode 100644 services/api/db/schema.rb
create mode 100644 services/api/db/structure.sql
via 1b4adbdc0711468971f619527cb250e8b743084b (commit)
via 02de894919a054c31384aeda99a2c2de3a09ee60 (commit)
via 5a3fcd947082b668f2d6941b88f0cf6399d4ad1e (commit)
from 76116fc706e2580e530d40b0e5f85783289150bf (commit)
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commit 1b4adbdc0711468971f619527cb250e8b743084b
Merge: 76116fc 02de894
Author: Brett Smith <brett at curoverse.com>
Date: Mon Jul 14 13:33:23 2014 -0400
Merge branch '3113-qsequence-serial'
Refs #3113. This is a useful bugfix, but we need to test whether
this fully resolves the issue.
commit 02de894919a054c31384aeda99a2c2de3a09ee60
Author: Brett Smith <brett at curoverse.com>
Date: Wed Jul 9 15:04:21 2014 -0400
3113: API server assigns task qsequence from a PostgreSQL sequence.
We always wanted monotonically increasing qsequence values. This
implements that.
Because sequences are specific to PostgreSQL, it can't be expressed in
schema.rb. This commit switches our Rails configuration to dump the
database schema in SQL to capture that.
PostgreSQL supports assigning a column's default value from a
sequence, but this doesn't play well with ActiveRecord. Without more
information, it always tries to assign NULL as the column value,
rather than leaving it unassigned to get the default. We have to get
the value from inside the model.
diff --git a/services/api/app/models/job_task.rb b/services/api/app/models/job_task.rb
index 89328de..4dcf256 100644
--- a/services/api/app/models/job_task.rb
+++ b/services/api/app/models/job_task.rb
@@ -3,6 +3,7 @@ class JobTask < ArvadosModel
include KindAndEtag
include CommonApiTemplate
serialize :parameters, Hash
+ before_create :set_default_qsequence
after_update :delete_created_job_tasks_if_failed
api_accessible :user, extend: :common do |t|
@@ -23,4 +24,9 @@ class JobTask < ArvadosModel
JobTask.delete_all ['created_by_job_task_uuid = ?', self.uuid]
end
end
+
+ def set_default_qsequence
+ self.qsequence ||= self.class.connection.
+ select_value("SELECT nextval('job_tasks_qsequence_seq')")
+ end
end
diff --git a/services/api/config/application.rb b/services/api/config/application.rb
index 2cd3fc9..4211df2 100644
--- a/services/api/config/application.rb
+++ b/services/api/config/application.rb
@@ -25,6 +25,7 @@ module Server
# Activate observers that should always be running.
# config.active_record.observers = :cacher, :garbage_collector, :forum_observer
+ config.active_record.schema_format = :sql
# The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
# config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
diff --git a/services/api/db/migrate/20140709172343_job_task_serial_qsequence.rb b/services/api/db/migrate/20140709172343_job_task_serial_qsequence.rb
new file mode 100644
index 0000000..db99e7c
--- /dev/null
+++ b/services/api/db/migrate/20140709172343_job_task_serial_qsequence.rb
@@ -0,0 +1,11 @@
+class JobTaskSerialQsequence < ActiveRecord::Migration
+ SEQ_NAME = "job_tasks_qsequence_seq"
+
+ def up
+ execute "CREATE SEQUENCE #{SEQ_NAME} OWNED BY job_tasks.qsequence;"
+ end
+
+ def down
+ execute "DROP SEQUENCE #{SEQ_NAME};"
+ end
+end
diff --git a/services/api/db/schema.rb b/services/api/db/schema.rb
deleted file mode 100644
index 256fa39..0000000
--- a/services/api/db/schema.rb
+++ /dev/null
@@ -1,443 +0,0 @@
-# encoding: UTF-8
-# This file is auto-generated from the current state of the database. Instead
-# of editing this file, please use the migrations feature of Active Record to
-# incrementally modify your database, and then regenerate this schema definition.
-#
-# Note that this schema.rb definition is the authoritative source for your
-# database schema. If you need to create the application database on another
-# system, you should be using db:schema:load, not running all the migrations
-# from scratch. The latter is a flawed and unsustainable approach (the more migrations
-# you'll amass, the slower it'll run and the greater likelihood for issues).
-#
-# It's strongly recommended to check this file into your version control system.
-
-ActiveRecord::Schema.define(:version => 20140627210837) do
-
-
-
- create_table "api_client_authorizations", :force => true do |t|
- t.string "api_token", :null => false
- t.integer "api_client_id", :null => false
- t.integer "user_id", :null => false
- t.string "created_by_ip_address"
- t.string "last_used_by_ip_address"
- t.datetime "last_used_at"
- t.datetime "expires_at"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- t.string "default_owner_uuid"
- t.text "scopes", :default => "---\n- all\n", :null => false
- end
-
- add_index "api_client_authorizations", ["api_client_id"], :name => "index_api_client_authorizations_on_api_client_id"
- add_index "api_client_authorizations", ["api_token"], :name => "index_api_client_authorizations_on_api_token", :unique => true
- add_index "api_client_authorizations", ["expires_at"], :name => "index_api_client_authorizations_on_expires_at"
- add_index "api_client_authorizations", ["user_id"], :name => "index_api_client_authorizations_on_user_id"
-
- create_table "api_clients", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "name"
- t.string "url_prefix"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- t.boolean "is_trusted", :default => false
- end
-
- add_index "api_clients", ["created_at"], :name => "index_api_clients_on_created_at"
- add_index "api_clients", ["modified_at"], :name => "index_api_clients_on_modified_at"
- add_index "api_clients", ["uuid"], :name => "index_api_clients_on_uuid", :unique => true
-
- create_table "authorized_keys", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "name"
- t.string "key_type"
- t.string "authorized_user_uuid"
- t.text "public_key"
- t.datetime "expires_at"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "authorized_keys", ["authorized_user_uuid", "expires_at"], :name => "index_authkeys_on_user_and_expires_at"
- add_index "authorized_keys", ["uuid"], :name => "index_authorized_keys_on_uuid", :unique => true
-
- create_table "collections", :force => true do |t|
- t.string "locator"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "portable_data_hash"
- t.integer "redundancy"
- t.string "redundancy_confirmed_by_client_uuid"
- t.datetime "redundancy_confirmed_at"
- t.integer "redundancy_confirmed_as"
- t.datetime "updated_at", :null => false
- t.string "uuid"
- t.text "manifest_text"
- end
-
- add_index "collections", ["created_at"], :name => "index_collections_on_created_at"
- add_index "collections", ["modified_at"], :name => "index_collections_on_modified_at"
- add_index "collections", ["uuid"], :name => "index_collections_on_uuid", :unique => true
-
- create_table "commit_ancestors", :force => true do |t|
- t.string "repository_name"
- t.string "descendant", :null => false
- t.string "ancestor", :null => false
- t.boolean "is", :default => false, :null => false
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "commit_ancestors", ["descendant", "ancestor"], :name => "index_commit_ancestors_on_descendant_and_ancestor", :unique => true
-
- create_table "commits", :force => true do |t|
- t.string "repository_name"
- t.string "sha1"
- t.string "message"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "commits", ["repository_name", "sha1"], :name => "index_commits_on_repository_name_and_sha1", :unique => true
-
- create_table "groups", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "name"
- t.text "description"
- t.datetime "updated_at", :null => false
- t.string "group_class"
- end
-
- add_index "groups", ["created_at"], :name => "index_groups_on_created_at"
- add_index "groups", ["group_class"], :name => "index_groups_on_group_class"
- add_index "groups", ["modified_at"], :name => "index_groups_on_modified_at"
- add_index "groups", ["uuid"], :name => "index_groups_on_uuid", :unique => true
-
- create_table "humans", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.text "properties"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "humans", ["uuid"], :name => "index_humans_on_uuid", :unique => true
-
- create_table "job_tasks", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "job_uuid"
- t.integer "sequence"
- t.text "parameters"
- t.text "output"
- t.float "progress"
- t.boolean "success"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- t.string "created_by_job_task_uuid"
- t.integer "qsequence", :limit => 8
- end
-
- add_index "job_tasks", ["created_at"], :name => "index_job_tasks_on_created_at"
- add_index "job_tasks", ["job_uuid"], :name => "index_job_tasks_on_job_uuid"
- add_index "job_tasks", ["modified_at"], :name => "index_job_tasks_on_modified_at"
- add_index "job_tasks", ["sequence"], :name => "index_job_tasks_on_sequence"
- add_index "job_tasks", ["success"], :name => "index_job_tasks_on_success"
- add_index "job_tasks", ["uuid"], :name => "index_job_tasks_on_uuid", :unique => true
-
- create_table "jobs", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "submit_id"
- t.string "script"
- t.string "script_version"
- t.text "script_parameters"
- t.string "cancelled_by_client_uuid"
- t.string "cancelled_by_user_uuid"
- t.datetime "cancelled_at"
- t.datetime "started_at"
- t.datetime "finished_at"
- t.boolean "running"
- t.boolean "success"
- t.string "output"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- t.string "priority"
- t.string "is_locked_by_uuid"
- t.string "log"
- t.text "tasks_summary"
- t.text "runtime_constraints"
- t.boolean "nondeterministic"
- t.string "repository"
- t.boolean "output_is_persistent", :default => false, :null => false
- t.string "supplied_script_version"
- t.string "docker_image_locator"
- end
-
- add_index "jobs", ["created_at"], :name => "index_jobs_on_created_at"
- add_index "jobs", ["finished_at"], :name => "index_jobs_on_finished_at"
- add_index "jobs", ["modified_at"], :name => "index_jobs_on_modified_at"
- add_index "jobs", ["output"], :name => "index_jobs_on_output"
- add_index "jobs", ["script"], :name => "index_jobs_on_script"
- add_index "jobs", ["started_at"], :name => "index_jobs_on_started_at"
- add_index "jobs", ["submit_id"], :name => "index_jobs_on_submit_id", :unique => true
- add_index "jobs", ["uuid"], :name => "index_jobs_on_uuid", :unique => true
-
- create_table "keep_disks", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "ping_secret", :null => false
- t.string "node_uuid"
- t.string "filesystem_uuid"
- t.integer "bytes_total"
- t.integer "bytes_free"
- t.boolean "is_readable", :default => true, :null => false
- t.boolean "is_writable", :default => true, :null => false
- t.datetime "last_read_at"
- t.datetime "last_write_at"
- t.datetime "last_ping_at"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- t.string "keep_service_uuid"
- end
-
- add_index "keep_disks", ["filesystem_uuid"], :name => "index_keep_disks_on_filesystem_uuid"
- add_index "keep_disks", ["last_ping_at"], :name => "index_keep_disks_on_last_ping_at"
- add_index "keep_disks", ["node_uuid"], :name => "index_keep_disks_on_node_uuid"
- add_index "keep_disks", ["uuid"], :name => "index_keep_disks_on_uuid", :unique => true
-
- create_table "keep_services", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "service_host"
- t.integer "service_port"
- t.boolean "service_ssl_flag"
- t.string "service_type"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "keep_services", ["uuid"], :name => "index_keep_services_on_uuid", :unique => true
-
- create_table "links", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "tail_uuid"
- t.string "link_class"
- t.string "name"
- t.string "head_uuid"
- t.text "properties"
- t.datetime "updated_at", :null => false
- end
-
- add_index "links", ["created_at"], :name => "index_links_on_created_at"
- add_index "links", ["head_uuid"], :name => "index_links_on_head_uuid"
- add_index "links", ["modified_at"], :name => "index_links_on_modified_at"
- add_index "links", ["tail_uuid", "name"], :name => "links_tail_name_unique_if_link_class_name", :unique => true, :where => "((link_class)::text = 'name'::text)"
- add_index "links", ["tail_uuid"], :name => "index_links_on_tail_uuid"
- add_index "links", ["uuid"], :name => "index_links_on_uuid", :unique => true
-
- create_table "logs", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.string "object_uuid"
- t.datetime "event_at"
- t.string "event_type"
- t.text "summary"
- t.text "properties"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- t.datetime "modified_at"
- t.string "object_owner_uuid"
- end
-
- add_index "logs", ["created_at"], :name => "index_logs_on_created_at"
- add_index "logs", ["event_at"], :name => "index_logs_on_event_at"
- add_index "logs", ["event_type"], :name => "index_logs_on_event_type"
- add_index "logs", ["modified_at"], :name => "index_logs_on_modified_at"
- add_index "logs", ["object_uuid"], :name => "index_logs_on_object_uuid"
- add_index "logs", ["summary"], :name => "index_logs_on_summary"
- add_index "logs", ["uuid"], :name => "index_logs_on_uuid", :unique => true
-
- create_table "nodes", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.integer "slot_number"
- t.string "hostname"
- t.string "domain"
- t.string "ip_address"
- t.datetime "first_ping_at"
- t.datetime "last_ping_at"
- t.text "info"
- t.datetime "updated_at", :null => false
- end
-
- add_index "nodes", ["created_at"], :name => "index_nodes_on_created_at"
- add_index "nodes", ["hostname"], :name => "index_nodes_on_hostname"
- add_index "nodes", ["modified_at"], :name => "index_nodes_on_modified_at"
- add_index "nodes", ["slot_number"], :name => "index_nodes_on_slot_number", :unique => true
- add_index "nodes", ["uuid"], :name => "index_nodes_on_uuid", :unique => true
-
- create_table "pipeline_instances", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "pipeline_template_uuid"
- t.string "name"
- t.text "components"
- t.datetime "updated_at", :null => false
- t.text "properties"
- t.string "state"
- t.text "components_summary"
- end
-
- add_index "pipeline_instances", ["created_at"], :name => "index_pipeline_instances_on_created_at"
- add_index "pipeline_instances", ["modified_at"], :name => "index_pipeline_instances_on_modified_at"
- add_index "pipeline_instances", ["uuid"], :name => "index_pipeline_instances_on_uuid", :unique => true
-
- create_table "pipeline_templates", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "name"
- t.text "components"
- t.datetime "updated_at", :null => false
- t.text "description"
- end
-
- add_index "pipeline_templates", ["created_at"], :name => "index_pipeline_templates_on_created_at"
- add_index "pipeline_templates", ["modified_at"], :name => "index_pipeline_templates_on_modified_at"
- add_index "pipeline_templates", ["uuid"], :name => "index_pipeline_templates_on_uuid", :unique => true
-
- create_table "repositories", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "name"
- t.string "fetch_url"
- t.string "push_url"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "repositories", ["name"], :name => "index_repositories_on_name", :unique => true
- add_index "repositories", ["uuid"], :name => "index_repositories_on_uuid", :unique => true
-
- create_table "specimens", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "material"
- t.datetime "updated_at", :null => false
- t.text "properties"
- end
-
- add_index "specimens", ["created_at"], :name => "index_specimens_on_created_at"
- add_index "specimens", ["modified_at"], :name => "index_specimens_on_modified_at"
- add_index "specimens", ["uuid"], :name => "index_specimens_on_uuid", :unique => true
-
- create_table "traits", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "name"
- t.text "properties"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "traits", ["name"], :name => "index_traits_on_name"
- add_index "traits", ["uuid"], :name => "index_traits_on_uuid", :unique => true
-
- create_table "users", :force => true do |t|
- t.string "uuid"
- t.string "owner_uuid"
- t.datetime "created_at", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "email"
- t.string "first_name"
- t.string "last_name"
- t.string "identity_url"
- t.boolean "is_admin"
- t.text "prefs"
- t.datetime "updated_at", :null => false
- t.string "default_owner_uuid"
- t.boolean "is_active", :default => false
- end
-
- add_index "users", ["created_at"], :name => "index_users_on_created_at"
- add_index "users", ["modified_at"], :name => "index_users_on_modified_at"
- add_index "users", ["uuid"], :name => "index_users_on_uuid", :unique => true
-
- create_table "virtual_machines", :force => true do |t|
- t.string "uuid", :null => false
- t.string "owner_uuid", :null => false
- t.string "modified_by_client_uuid"
- t.string "modified_by_user_uuid"
- t.datetime "modified_at"
- t.string "hostname"
- t.datetime "created_at", :null => false
- t.datetime "updated_at", :null => false
- end
-
- add_index "virtual_machines", ["hostname"], :name => "index_virtual_machines_on_hostname"
- add_index "virtual_machines", ["uuid"], :name => "index_virtual_machines_on_uuid", :unique => true
-
-
-end
diff --git a/services/api/db/structure.sql b/services/api/db/structure.sql
new file mode 100644
index 0000000..850a89e
--- /dev/null
+++ b/services/api/db/structure.sql
@@ -0,0 +1,1974 @@
+--
+-- PostgreSQL database dump
+--
+
+SET statement_timeout = 0;
+SET client_encoding = 'UTF8';
+SET standard_conforming_strings = on;
+SET check_function_bodies = false;
+SET client_min_messages = warning;
+
+--
+-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: -
+--
+
+CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;
+
+
+--
+-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: -
+--
+
+COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';
+
+
+SET search_path = public, pg_catalog;
+
+SET default_tablespace = '';
+
+SET default_with_oids = false;
+
+--
+-- Name: api_client_authorizations; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE api_client_authorizations (
+ id integer NOT NULL,
+ api_token character varying(255) NOT NULL,
+ api_client_id integer NOT NULL,
+ user_id integer NOT NULL,
+ created_by_ip_address character varying(255),
+ last_used_by_ip_address character varying(255),
+ last_used_at timestamp without time zone,
+ expires_at timestamp without time zone,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL,
+ default_owner_uuid character varying(255),
+ scopes text DEFAULT '---
+- all
+'::text NOT NULL
+);
+
+
+--
+-- Name: api_client_authorizations_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE api_client_authorizations_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: api_client_authorizations_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE api_client_authorizations_id_seq OWNED BY api_client_authorizations.id;
+
+
+--
+-- Name: api_clients; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE api_clients (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ name character varying(255),
+ url_prefix character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL,
+ is_trusted boolean DEFAULT false
+);
+
+
+--
+-- Name: api_clients_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE api_clients_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: api_clients_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE api_clients_id_seq OWNED BY api_clients.id;
+
+
+--
+-- Name: authorized_keys; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE authorized_keys (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ name character varying(255),
+ key_type character varying(255),
+ authorized_user_uuid character varying(255),
+ public_key text,
+ expires_at timestamp without time zone,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: authorized_keys_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE authorized_keys_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: authorized_keys_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE authorized_keys_id_seq OWNED BY authorized_keys.id;
+
+
+--
+-- Name: collections; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE collections (
+ id integer NOT NULL,
+ locator character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ portable_data_hash character varying(255),
+ redundancy integer,
+ redundancy_confirmed_by_client_uuid character varying(255),
+ redundancy_confirmed_at timestamp without time zone,
+ redundancy_confirmed_as integer,
+ updated_at timestamp without time zone NOT NULL,
+ uuid character varying(255),
+ manifest_text text
+);
+
+
+--
+-- Name: collections_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE collections_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: collections_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE collections_id_seq OWNED BY collections.id;
+
+
+--
+-- Name: commit_ancestors; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE commit_ancestors (
+ id integer NOT NULL,
+ repository_name character varying(255),
+ descendant character varying(255) NOT NULL,
+ ancestor character varying(255) NOT NULL,
+ "is" boolean DEFAULT false NOT NULL,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: commit_ancestors_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE commit_ancestors_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: commit_ancestors_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE commit_ancestors_id_seq OWNED BY commit_ancestors.id;
+
+
+--
+-- Name: commits; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE commits (
+ id integer NOT NULL,
+ repository_name character varying(255),
+ sha1 character varying(255),
+ message character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: commits_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE commits_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: commits_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE commits_id_seq OWNED BY commits.id;
+
+
+--
+-- Name: groups; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE groups (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ name character varying(255),
+ description text,
+ updated_at timestamp without time zone NOT NULL,
+ group_class character varying(255)
+);
+
+
+--
+-- Name: groups_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE groups_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: groups_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE groups_id_seq OWNED BY groups.id;
+
+
+--
+-- Name: humans; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE humans (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ properties text,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: humans_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE humans_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: humans_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE humans_id_seq OWNED BY humans.id;
+
+
+--
+-- Name: job_tasks; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE job_tasks (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ job_uuid character varying(255),
+ sequence integer,
+ parameters text,
+ output text,
+ progress double precision,
+ success boolean,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL,
+ created_by_job_task_uuid character varying(255),
+ qsequence bigint
+);
+
+
+--
+-- Name: job_tasks_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE job_tasks_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: job_tasks_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE job_tasks_id_seq OWNED BY job_tasks.id;
+
+
+--
+-- Name: job_tasks_qsequence_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE job_tasks_qsequence_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: job_tasks_qsequence_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE job_tasks_qsequence_seq OWNED BY job_tasks.qsequence;
+
+
+--
+-- Name: jobs; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE jobs (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ submit_id character varying(255),
+ script character varying(255),
+ script_version character varying(255),
+ script_parameters text,
+ cancelled_by_client_uuid character varying(255),
+ cancelled_by_user_uuid character varying(255),
+ cancelled_at timestamp without time zone,
+ started_at timestamp without time zone,
+ finished_at timestamp without time zone,
+ running boolean,
+ success boolean,
+ output character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL,
+ priority character varying(255),
+ is_locked_by_uuid character varying(255),
+ log character varying(255),
+ tasks_summary text,
+ runtime_constraints text,
+ nondeterministic boolean,
+ repository character varying(255),
+ output_is_persistent boolean DEFAULT false NOT NULL,
+ supplied_script_version character varying(255),
+ docker_image_locator character varying(255)
+);
+
+
+--
+-- Name: jobs_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE jobs_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: jobs_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE jobs_id_seq OWNED BY jobs.id;
+
+
+--
+-- Name: keep_disks; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE keep_disks (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ ping_secret character varying(255) NOT NULL,
+ node_uuid character varying(255),
+ filesystem_uuid character varying(255),
+ bytes_total integer,
+ bytes_free integer,
+ is_readable boolean DEFAULT true NOT NULL,
+ is_writable boolean DEFAULT true NOT NULL,
+ last_read_at timestamp without time zone,
+ last_write_at timestamp without time zone,
+ last_ping_at timestamp without time zone,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL,
+ keep_service_uuid character varying(255)
+);
+
+
+--
+-- Name: keep_disks_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE keep_disks_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: keep_disks_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE keep_disks_id_seq OWNED BY keep_disks.id;
+
+
+--
+-- Name: keep_services; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE keep_services (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ service_host character varying(255),
+ service_port integer,
+ service_ssl_flag boolean,
+ service_type character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: keep_services_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE keep_services_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: keep_services_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE keep_services_id_seq OWNED BY keep_services.id;
+
+
+--
+-- Name: links; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE links (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ tail_uuid character varying(255),
+ link_class character varying(255),
+ name character varying(255),
+ head_uuid character varying(255),
+ properties text,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: links_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE links_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: links_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE links_id_seq OWNED BY links.id;
+
+
+--
+-- Name: logs; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE logs (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ object_uuid character varying(255),
+ event_at timestamp without time zone,
+ event_type character varying(255),
+ summary text,
+ properties text,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL,
+ modified_at timestamp without time zone,
+ object_owner_uuid character varying(255)
+);
+
+
+--
+-- Name: logs_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE logs_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: logs_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE logs_id_seq OWNED BY logs.id;
+
+
+--
+-- Name: nodes; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE nodes (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ slot_number integer,
+ hostname character varying(255),
+ domain character varying(255),
+ ip_address character varying(255),
+ first_ping_at timestamp without time zone,
+ last_ping_at timestamp without time zone,
+ info text,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: nodes_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE nodes_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: nodes_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE nodes_id_seq OWNED BY nodes.id;
+
+
+--
+-- Name: pipeline_instances; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE pipeline_instances (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ pipeline_template_uuid character varying(255),
+ name character varying(255),
+ components text,
+ updated_at timestamp without time zone NOT NULL,
+ properties text,
+ state character varying(255),
+ components_summary text
+);
+
+
+--
+-- Name: pipeline_instances_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE pipeline_instances_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: pipeline_instances_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE pipeline_instances_id_seq OWNED BY pipeline_instances.id;
+
+
+--
+-- Name: pipeline_templates; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE pipeline_templates (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ name character varying(255),
+ components text,
+ updated_at timestamp without time zone NOT NULL,
+ description text
+);
+
+
+--
+-- Name: pipeline_templates_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE pipeline_templates_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: pipeline_templates_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE pipeline_templates_id_seq OWNED BY pipeline_templates.id;
+
+
+--
+-- Name: repositories; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE repositories (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ name character varying(255),
+ fetch_url character varying(255),
+ push_url character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: repositories_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE repositories_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: repositories_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE repositories_id_seq OWNED BY repositories.id;
+
+
+--
+-- Name: schema_migrations; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE schema_migrations (
+ version character varying(255) NOT NULL
+);
+
+
+--
+-- Name: specimens; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE specimens (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ material character varying(255),
+ updated_at timestamp without time zone NOT NULL,
+ properties text
+);
+
+
+--
+-- Name: specimens_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE specimens_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: specimens_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE specimens_id_seq OWNED BY specimens.id;
+
+
+--
+-- Name: traits; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE traits (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ name character varying(255),
+ properties text,
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: traits_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE traits_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: traits_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE traits_id_seq OWNED BY traits.id;
+
+
+--
+-- Name: users; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE users (
+ id integer NOT NULL,
+ uuid character varying(255),
+ owner_uuid character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ email character varying(255),
+ first_name character varying(255),
+ last_name character varying(255),
+ identity_url character varying(255),
+ is_admin boolean,
+ prefs text,
+ updated_at timestamp without time zone NOT NULL,
+ default_owner_uuid character varying(255),
+ is_active boolean DEFAULT false
+);
+
+
+--
+-- Name: users_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE users_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: users_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE users_id_seq OWNED BY users.id;
+
+
+--
+-- Name: virtual_machines; Type: TABLE; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE TABLE virtual_machines (
+ id integer NOT NULL,
+ uuid character varying(255) NOT NULL,
+ owner_uuid character varying(255) NOT NULL,
+ modified_by_client_uuid character varying(255),
+ modified_by_user_uuid character varying(255),
+ modified_at timestamp without time zone,
+ hostname character varying(255),
+ created_at timestamp without time zone NOT NULL,
+ updated_at timestamp without time zone NOT NULL
+);
+
+
+--
+-- Name: virtual_machines_id_seq; Type: SEQUENCE; Schema: public; Owner: -
+--
+
+CREATE SEQUENCE virtual_machines_id_seq
+ START WITH 1
+ INCREMENT BY 1
+ NO MINVALUE
+ NO MAXVALUE
+ CACHE 1;
+
+
+--
+-- Name: virtual_machines_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
+--
+
+ALTER SEQUENCE virtual_machines_id_seq OWNED BY virtual_machines.id;
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY api_client_authorizations ALTER COLUMN id SET DEFAULT nextval('api_client_authorizations_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY api_clients ALTER COLUMN id SET DEFAULT nextval('api_clients_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY authorized_keys ALTER COLUMN id SET DEFAULT nextval('authorized_keys_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY collections ALTER COLUMN id SET DEFAULT nextval('collections_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY commit_ancestors ALTER COLUMN id SET DEFAULT nextval('commit_ancestors_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY commits ALTER COLUMN id SET DEFAULT nextval('commits_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY groups ALTER COLUMN id SET DEFAULT nextval('groups_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY humans ALTER COLUMN id SET DEFAULT nextval('humans_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY job_tasks ALTER COLUMN id SET DEFAULT nextval('job_tasks_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY jobs ALTER COLUMN id SET DEFAULT nextval('jobs_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY keep_disks ALTER COLUMN id SET DEFAULT nextval('keep_disks_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY keep_services ALTER COLUMN id SET DEFAULT nextval('keep_services_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY links ALTER COLUMN id SET DEFAULT nextval('links_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY logs ALTER COLUMN id SET DEFAULT nextval('logs_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY nodes ALTER COLUMN id SET DEFAULT nextval('nodes_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY pipeline_instances ALTER COLUMN id SET DEFAULT nextval('pipeline_instances_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY pipeline_templates ALTER COLUMN id SET DEFAULT nextval('pipeline_templates_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY repositories ALTER COLUMN id SET DEFAULT nextval('repositories_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY specimens ALTER COLUMN id SET DEFAULT nextval('specimens_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY traits ALTER COLUMN id SET DEFAULT nextval('traits_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY users ALTER COLUMN id SET DEFAULT nextval('users_id_seq'::regclass);
+
+
+--
+-- Name: id; Type: DEFAULT; Schema: public; Owner: -
+--
+
+ALTER TABLE ONLY virtual_machines ALTER COLUMN id SET DEFAULT nextval('virtual_machines_id_seq'::regclass);
+
+
+--
+-- Name: api_client_authorizations_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY api_client_authorizations
+ ADD CONSTRAINT api_client_authorizations_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: api_clients_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY api_clients
+ ADD CONSTRAINT api_clients_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: authorized_keys_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY authorized_keys
+ ADD CONSTRAINT authorized_keys_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: collections_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY collections
+ ADD CONSTRAINT collections_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: commit_ancestors_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY commit_ancestors
+ ADD CONSTRAINT commit_ancestors_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: commits_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY commits
+ ADD CONSTRAINT commits_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: groups_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY groups
+ ADD CONSTRAINT groups_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: humans_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY humans
+ ADD CONSTRAINT humans_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: job_tasks_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY job_tasks
+ ADD CONSTRAINT job_tasks_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: jobs_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY jobs
+ ADD CONSTRAINT jobs_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: keep_disks_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY keep_disks
+ ADD CONSTRAINT keep_disks_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: keep_services_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY keep_services
+ ADD CONSTRAINT keep_services_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: links_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY links
+ ADD CONSTRAINT links_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: logs_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY logs
+ ADD CONSTRAINT logs_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: nodes_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY nodes
+ ADD CONSTRAINT nodes_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: pipeline_instances_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY pipeline_instances
+ ADD CONSTRAINT pipeline_instances_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: pipeline_templates_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY pipeline_templates
+ ADD CONSTRAINT pipeline_templates_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: repositories_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY repositories
+ ADD CONSTRAINT repositories_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: specimens_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY specimens
+ ADD CONSTRAINT specimens_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: traits_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY traits
+ ADD CONSTRAINT traits_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: users_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY users
+ ADD CONSTRAINT users_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: virtual_machines_pkey; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
+--
+
+ALTER TABLE ONLY virtual_machines
+ ADD CONSTRAINT virtual_machines_pkey PRIMARY KEY (id);
+
+
+--
+-- Name: index_api_client_authorizations_on_api_client_id; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_api_client_authorizations_on_api_client_id ON api_client_authorizations USING btree (api_client_id);
+
+
+--
+-- Name: index_api_client_authorizations_on_api_token; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_api_client_authorizations_on_api_token ON api_client_authorizations USING btree (api_token);
+
+
+--
+-- Name: index_api_client_authorizations_on_expires_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_api_client_authorizations_on_expires_at ON api_client_authorizations USING btree (expires_at);
+
+
+--
+-- Name: index_api_client_authorizations_on_user_id; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_api_client_authorizations_on_user_id ON api_client_authorizations USING btree (user_id);
+
+
+--
+-- Name: index_api_clients_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_api_clients_on_created_at ON api_clients USING btree (created_at);
+
+
+--
+-- Name: index_api_clients_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_api_clients_on_modified_at ON api_clients USING btree (modified_at);
+
+
+--
+-- Name: index_api_clients_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_api_clients_on_uuid ON api_clients USING btree (uuid);
+
+
+--
+-- Name: index_authkeys_on_user_and_expires_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_authkeys_on_user_and_expires_at ON authorized_keys USING btree (authorized_user_uuid, expires_at);
+
+
+--
+-- Name: index_authorized_keys_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_authorized_keys_on_uuid ON authorized_keys USING btree (uuid);
+
+
+--
+-- Name: index_collections_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_collections_on_created_at ON collections USING btree (created_at);
+
+
+--
+-- Name: index_collections_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_collections_on_modified_at ON collections USING btree (modified_at);
+
+
+--
+-- Name: index_collections_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_collections_on_uuid ON collections USING btree (uuid);
+
+
+--
+-- Name: index_commit_ancestors_on_descendant_and_ancestor; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_commit_ancestors_on_descendant_and_ancestor ON commit_ancestors USING btree (descendant, ancestor);
+
+
+--
+-- Name: index_commits_on_repository_name_and_sha1; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_commits_on_repository_name_and_sha1 ON commits USING btree (repository_name, sha1);
+
+
+--
+-- Name: index_groups_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_groups_on_created_at ON groups USING btree (created_at);
+
+
+--
+-- Name: index_groups_on_group_class; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_groups_on_group_class ON groups USING btree (group_class);
+
+
+--
+-- Name: index_groups_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_groups_on_modified_at ON groups USING btree (modified_at);
+
+
+--
+-- Name: index_groups_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_groups_on_uuid ON groups USING btree (uuid);
+
+
+--
+-- Name: index_humans_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_humans_on_uuid ON humans USING btree (uuid);
+
+
+--
+-- Name: index_job_tasks_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_job_tasks_on_created_at ON job_tasks USING btree (created_at);
+
+
+--
+-- Name: index_job_tasks_on_job_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_job_tasks_on_job_uuid ON job_tasks USING btree (job_uuid);
+
+
+--
+-- Name: index_job_tasks_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_job_tasks_on_modified_at ON job_tasks USING btree (modified_at);
+
+
+--
+-- Name: index_job_tasks_on_sequence; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_job_tasks_on_sequence ON job_tasks USING btree (sequence);
+
+
+--
+-- Name: index_job_tasks_on_success; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_job_tasks_on_success ON job_tasks USING btree (success);
+
+
+--
+-- Name: index_job_tasks_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_job_tasks_on_uuid ON job_tasks USING btree (uuid);
+
+
+--
+-- Name: index_jobs_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_jobs_on_created_at ON jobs USING btree (created_at);
+
+
+--
+-- Name: index_jobs_on_finished_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_jobs_on_finished_at ON jobs USING btree (finished_at);
+
+
+--
+-- Name: index_jobs_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_jobs_on_modified_at ON jobs USING btree (modified_at);
+
+
+--
+-- Name: index_jobs_on_output; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_jobs_on_output ON jobs USING btree (output);
+
+
+--
+-- Name: index_jobs_on_script; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_jobs_on_script ON jobs USING btree (script);
+
+
+--
+-- Name: index_jobs_on_started_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_jobs_on_started_at ON jobs USING btree (started_at);
+
+
+--
+-- Name: index_jobs_on_submit_id; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_jobs_on_submit_id ON jobs USING btree (submit_id);
+
+
+--
+-- Name: index_jobs_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_jobs_on_uuid ON jobs USING btree (uuid);
+
+
+--
+-- Name: index_keep_disks_on_filesystem_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_keep_disks_on_filesystem_uuid ON keep_disks USING btree (filesystem_uuid);
+
+
+--
+-- Name: index_keep_disks_on_last_ping_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_keep_disks_on_last_ping_at ON keep_disks USING btree (last_ping_at);
+
+
+--
+-- Name: index_keep_disks_on_node_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_keep_disks_on_node_uuid ON keep_disks USING btree (node_uuid);
+
+
+--
+-- Name: index_keep_disks_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_keep_disks_on_uuid ON keep_disks USING btree (uuid);
+
+
+--
+-- Name: index_keep_services_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_keep_services_on_uuid ON keep_services USING btree (uuid);
+
+
+--
+-- Name: index_links_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_links_on_created_at ON links USING btree (created_at);
+
+
+--
+-- Name: index_links_on_head_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_links_on_head_uuid ON links USING btree (head_uuid);
+
+
+--
+-- Name: index_links_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_links_on_modified_at ON links USING btree (modified_at);
+
+
+--
+-- Name: index_links_on_tail_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_links_on_tail_uuid ON links USING btree (tail_uuid);
+
+
+--
+-- Name: index_links_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_links_on_uuid ON links USING btree (uuid);
+
+
+--
+-- Name: index_logs_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_logs_on_created_at ON logs USING btree (created_at);
+
+
+--
+-- Name: index_logs_on_event_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_logs_on_event_at ON logs USING btree (event_at);
+
+
+--
+-- Name: index_logs_on_event_type; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_logs_on_event_type ON logs USING btree (event_type);
+
+
+--
+-- Name: index_logs_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_logs_on_modified_at ON logs USING btree (modified_at);
+
+
+--
+-- Name: index_logs_on_object_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_logs_on_object_uuid ON logs USING btree (object_uuid);
+
+
+--
+-- Name: index_logs_on_summary; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_logs_on_summary ON logs USING btree (summary);
+
+
+--
+-- Name: index_logs_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_logs_on_uuid ON logs USING btree (uuid);
+
+
+--
+-- Name: index_nodes_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_nodes_on_created_at ON nodes USING btree (created_at);
+
+
+--
+-- Name: index_nodes_on_hostname; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_nodes_on_hostname ON nodes USING btree (hostname);
+
+
+--
+-- Name: index_nodes_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_nodes_on_modified_at ON nodes USING btree (modified_at);
+
+
+--
+-- Name: index_nodes_on_slot_number; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_nodes_on_slot_number ON nodes USING btree (slot_number);
+
+
+--
+-- Name: index_nodes_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_nodes_on_uuid ON nodes USING btree (uuid);
+
+
+--
+-- Name: index_pipeline_instances_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_pipeline_instances_on_created_at ON pipeline_instances USING btree (created_at);
+
+
+--
+-- Name: index_pipeline_instances_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_pipeline_instances_on_modified_at ON pipeline_instances USING btree (modified_at);
+
+
+--
+-- Name: index_pipeline_instances_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_pipeline_instances_on_uuid ON pipeline_instances USING btree (uuid);
+
+
+--
+-- Name: index_pipeline_templates_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_pipeline_templates_on_created_at ON pipeline_templates USING btree (created_at);
+
+
+--
+-- Name: index_pipeline_templates_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_pipeline_templates_on_modified_at ON pipeline_templates USING btree (modified_at);
+
+
+--
+-- Name: index_pipeline_templates_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_pipeline_templates_on_uuid ON pipeline_templates USING btree (uuid);
+
+
+--
+-- Name: index_repositories_on_name; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_repositories_on_name ON repositories USING btree (name);
+
+
+--
+-- Name: index_repositories_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_repositories_on_uuid ON repositories USING btree (uuid);
+
+
+--
+-- Name: index_specimens_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_specimens_on_created_at ON specimens USING btree (created_at);
+
+
+--
+-- Name: index_specimens_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_specimens_on_modified_at ON specimens USING btree (modified_at);
+
+
+--
+-- Name: index_specimens_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_specimens_on_uuid ON specimens USING btree (uuid);
+
+
+--
+-- Name: index_traits_on_name; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_traits_on_name ON traits USING btree (name);
+
+
+--
+-- Name: index_traits_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_traits_on_uuid ON traits USING btree (uuid);
+
+
+--
+-- Name: index_users_on_created_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_users_on_created_at ON users USING btree (created_at);
+
+
+--
+-- Name: index_users_on_modified_at; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_users_on_modified_at ON users USING btree (modified_at);
+
+
+--
+-- Name: index_users_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_users_on_uuid ON users USING btree (uuid);
+
+
+--
+-- Name: index_virtual_machines_on_hostname; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE INDEX index_virtual_machines_on_hostname ON virtual_machines USING btree (hostname);
+
+
+--
+-- Name: index_virtual_machines_on_uuid; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX index_virtual_machines_on_uuid ON virtual_machines USING btree (uuid);
+
+
+--
+-- Name: links_tail_name_unique_if_link_class_name; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX links_tail_name_unique_if_link_class_name ON links USING btree (tail_uuid, name) WHERE ((link_class)::text = 'name'::text);
+
+
+--
+-- Name: unique_schema_migrations; Type: INDEX; Schema: public; Owner: -; Tablespace:
+--
+
+CREATE UNIQUE INDEX unique_schema_migrations ON schema_migrations USING btree (version);
+
+
+--
+-- PostgreSQL database dump complete
+--
+
+SET search_path TO "$user",public;
+
+INSERT INTO schema_migrations (version) VALUES ('20121016005009');
+
+INSERT INTO schema_migrations (version) VALUES ('20130105203021');
+
+INSERT INTO schema_migrations (version) VALUES ('20130105224358');
+
+INSERT INTO schema_migrations (version) VALUES ('20130105224618');
+
+INSERT INTO schema_migrations (version) VALUES ('20130107181109');
+
+INSERT INTO schema_migrations (version) VALUES ('20130107212832');
+
+INSERT INTO schema_migrations (version) VALUES ('20130109175700');
+
+INSERT INTO schema_migrations (version) VALUES ('20130109220548');
+
+INSERT INTO schema_migrations (version) VALUES ('20130113214204');
+
+INSERT INTO schema_migrations (version) VALUES ('20130116024233');
+
+INSERT INTO schema_migrations (version) VALUES ('20130116215213');
+
+INSERT INTO schema_migrations (version) VALUES ('20130118002239');
+
+INSERT INTO schema_migrations (version) VALUES ('20130122020042');
+
+INSERT INTO schema_migrations (version) VALUES ('20130122201442');
+
+INSERT INTO schema_migrations (version) VALUES ('20130122221616');
+
+INSERT INTO schema_migrations (version) VALUES ('20130123174514');
+
+INSERT INTO schema_migrations (version) VALUES ('20130123180224');
+
+INSERT INTO schema_migrations (version) VALUES ('20130123180228');
+
+INSERT INTO schema_migrations (version) VALUES ('20130125220425');
+
+INSERT INTO schema_migrations (version) VALUES ('20130128202518');
+
+INSERT INTO schema_migrations (version) VALUES ('20130128231343');
+
+INSERT INTO schema_migrations (version) VALUES ('20130130205749');
+
+INSERT INTO schema_migrations (version) VALUES ('20130203104818');
+
+INSERT INTO schema_migrations (version) VALUES ('20130203104824');
+
+INSERT INTO schema_migrations (version) VALUES ('20130203115329');
+
+INSERT INTO schema_migrations (version) VALUES ('20130207195855');
+
+INSERT INTO schema_migrations (version) VALUES ('20130218181504');
+
+INSERT INTO schema_migrations (version) VALUES ('20130226170000');
+
+INSERT INTO schema_migrations (version) VALUES ('20130313175417');
+
+INSERT INTO schema_migrations (version) VALUES ('20130315155820');
+
+INSERT INTO schema_migrations (version) VALUES ('20130315183626');
+
+INSERT INTO schema_migrations (version) VALUES ('20130315213205');
+
+INSERT INTO schema_migrations (version) VALUES ('20130318002138');
+
+INSERT INTO schema_migrations (version) VALUES ('20130319165853');
+
+INSERT INTO schema_migrations (version) VALUES ('20130319180730');
+
+INSERT INTO schema_migrations (version) VALUES ('20130319194637');
+
+INSERT INTO schema_migrations (version) VALUES ('20130319201431');
+
+INSERT INTO schema_migrations (version) VALUES ('20130319235957');
+
+INSERT INTO schema_migrations (version) VALUES ('20130320000107');
+
+INSERT INTO schema_migrations (version) VALUES ('20130326173804');
+
+INSERT INTO schema_migrations (version) VALUES ('20130326182917');
+
+INSERT INTO schema_migrations (version) VALUES ('20130415020241');
+
+INSERT INTO schema_migrations (version) VALUES ('20130425024459');
+
+INSERT INTO schema_migrations (version) VALUES ('20130425214427');
+
+INSERT INTO schema_migrations (version) VALUES ('20130523060112');
+
+INSERT INTO schema_migrations (version) VALUES ('20130523060213');
+
+INSERT INTO schema_migrations (version) VALUES ('20130524042319');
+
+INSERT INTO schema_migrations (version) VALUES ('20130528134100');
+
+INSERT INTO schema_migrations (version) VALUES ('20130606183519');
+
+INSERT INTO schema_migrations (version) VALUES ('20130608053730');
+
+INSERT INTO schema_migrations (version) VALUES ('20130610202538');
+
+INSERT INTO schema_migrations (version) VALUES ('20130611163736');
+
+INSERT INTO schema_migrations (version) VALUES ('20130612042554');
+
+INSERT INTO schema_migrations (version) VALUES ('20130617150007');
+
+INSERT INTO schema_migrations (version) VALUES ('20130626002829');
+
+INSERT INTO schema_migrations (version) VALUES ('20130626022810');
+
+INSERT INTO schema_migrations (version) VALUES ('20130627154537');
+
+INSERT INTO schema_migrations (version) VALUES ('20130627184333');
+
+INSERT INTO schema_migrations (version) VALUES ('20130708163414');
+
+INSERT INTO schema_migrations (version) VALUES ('20130708182912');
+
+INSERT INTO schema_migrations (version) VALUES ('20130708185153');
+
+INSERT INTO schema_migrations (version) VALUES ('20130724153034');
+
+INSERT INTO schema_migrations (version) VALUES ('20131007180607');
+
+INSERT INTO schema_migrations (version) VALUES ('20140117231056');
+
+INSERT INTO schema_migrations (version) VALUES ('20140124222114');
+
+INSERT INTO schema_migrations (version) VALUES ('20140129184311');
+
+INSERT INTO schema_migrations (version) VALUES ('20140317135600');
+
+INSERT INTO schema_migrations (version) VALUES ('20140319160547');
+
+INSERT INTO schema_migrations (version) VALUES ('20140321191343');
+
+INSERT INTO schema_migrations (version) VALUES ('20140324024606');
+
+INSERT INTO schema_migrations (version) VALUES ('20140325175653');
+
+INSERT INTO schema_migrations (version) VALUES ('20140402001908');
+
+INSERT INTO schema_migrations (version) VALUES ('20140407184311');
+
+INSERT INTO schema_migrations (version) VALUES ('20140421140924');
+
+INSERT INTO schema_migrations (version) VALUES ('20140421151939');
+
+INSERT INTO schema_migrations (version) VALUES ('20140421151940');
+
+INSERT INTO schema_migrations (version) VALUES ('20140422011506');
+
+INSERT INTO schema_migrations (version) VALUES ('20140423132913');
+
+INSERT INTO schema_migrations (version) VALUES ('20140423133559');
+
+INSERT INTO schema_migrations (version) VALUES ('20140501165548');
+
+INSERT INTO schema_migrations (version) VALUES ('20140519205916');
+
+INSERT INTO schema_migrations (version) VALUES ('20140527152921');
+
+INSERT INTO schema_migrations (version) VALUES ('20140530200539');
+
+INSERT INTO schema_migrations (version) VALUES ('20140601022548');
+
+INSERT INTO schema_migrations (version) VALUES ('20140602143352');
+
+INSERT INTO schema_migrations (version) VALUES ('20140611173003');
+
+INSERT INTO schema_migrations (version) VALUES ('20140627210837');
+
+INSERT INTO schema_migrations (version) VALUES ('20140709172343');
\ No newline at end of file
diff --git a/services/api/test/integration/jobs_api_test.rb b/services/api/test/integration/jobs_api_test.rb
index 9302a73..89eb84f 100644
--- a/services/api/test/integration/jobs_api_test.rb
+++ b/services/api/test/integration/jobs_api_test.rb
@@ -20,4 +20,23 @@ class JobsApiTest < ActionDispatch::IntegrationTest
assert_response 404
end
+ test "task qsequence values automatically increase monotonically" do
+ post_args = ["/arvados/v1/job_tasks",
+ {job_task: {
+ job_uuid: jobs(:running).uuid,
+ sequence: 1,
+ }},
+ auth(:active)]
+ last_qsequence = -1
+ (1..3).each do |task_num|
+ @response = nil
+ post(*post_args)
+ assert_response :success
+ qsequence = json_response["qsequence"]
+ assert_not_nil(qsequence, "task not assigned qsequence")
+ assert_operator(qsequence, :>, last_qsequence,
+ "qsequence did not increase between tasks")
+ last_qsequence = qsequence
+ end
+ end
end
diff --git a/services/api/test/unit/job_task_test.rb b/services/api/test/unit/job_task_test.rb
index 3c7c1e7..7907b03 100644
--- a/services/api/test/unit/job_task_test.rb
+++ b/services/api/test/unit/job_task_test.rb
@@ -1,7 +1,16 @@
require 'test_helper'
class JobTaskTest < ActiveSupport::TestCase
- # test "the truth" do
- # assert true
- # end
+ test "new tasks get an assigned qsequence" do
+ set_user_from_auth :active
+ task = JobTask.create
+ assert_not_nil task.qsequence
+ assert_operator(task.qsequence, :>=, 0)
+ end
+
+ test "assigned qsequence is not overwritten" do
+ set_user_from_auth :active
+ task = JobTask.create(qsequence: 99)
+ assert_equal(99, task.qsequence)
+ end
end
commit 5a3fcd947082b668f2d6941b88f0cf6399d4ad1e
Author: Tom Clegg <tom at curoverse.com>
Date: Wed Jul 9 12:58:31 2014 -0400
3113: Remove qsequence assignment shim. Clarify "do not load tasks
queued by a failed task" logic in crunch-job.
diff --git a/sdk/cli/bin/crunch-job b/sdk/cli/bin/crunch-job
index ca2e8c4..a4951e7 100755
--- a/sdk/cli/bin/crunch-job
+++ b/sdk/cli/bin/crunch-job
@@ -985,27 +985,29 @@ sub reapchildren
push @freeslot, $proc{$pid}->{slot};
delete $proc{$pid};
- # Load new tasks
- my $newtask_list = [];
- my $newtask_results;
- do {
- $newtask_results = $arv->{'job_tasks'}->{'list'}->execute(
- 'where' => {
- 'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid}
- },
- 'order' => 'qsequence',
- 'offset' => scalar(@$newtask_list),
- );
- push(@$newtask_list, @{$newtask_results->{items}});
- } while (@{$newtask_results->{items}});
- foreach my $arvados_task (@$newtask_list) {
- my $jobstep = {
- 'level' => $arvados_task->{'sequence'},
- 'failures' => 0,
- 'arvados_task' => $arvados_task
- };
- push @jobstep, $jobstep;
- push @jobstep_todo, $#jobstep;
+ if ($task_success) {
+ # Load new tasks
+ my $newtask_list = [];
+ my $newtask_results;
+ do {
+ $newtask_results = $arv->{'job_tasks'}->{'list'}->execute(
+ 'where' => {
+ 'created_by_job_task_uuid' => $Jobstep->{'arvados_task'}->{uuid}
+ },
+ 'order' => 'qsequence',
+ 'offset' => scalar(@$newtask_list),
+ );
+ push(@$newtask_list, @{$newtask_results->{items}});
+ } while (@{$newtask_results->{items}});
+ foreach my $arvados_task (@$newtask_list) {
+ my $jobstep = {
+ 'level' => $arvados_task->{'sequence'},
+ 'failures' => 0,
+ 'arvados_task' => $arvados_task
+ };
+ push @jobstep, $jobstep;
+ push @jobstep_todo, $#jobstep;
+ }
}
$progress_is_dirty = 1;
diff --git a/services/api/app/models/job_task.rb b/services/api/app/models/job_task.rb
index d5d2edd..89328de 100644
--- a/services/api/app/models/job_task.rb
+++ b/services/api/app/models/job_task.rb
@@ -4,7 +4,6 @@ class JobTask < ArvadosModel
include CommonApiTemplate
serialize :parameters, Hash
after_update :delete_created_job_tasks_if_failed
- after_update :assign_created_job_tasks_qsequence_if_succeeded
api_accessible :user, extend: :common do |t|
t.add :job_uuid
@@ -24,13 +23,4 @@ class JobTask < ArvadosModel
JobTask.delete_all ['created_by_job_task_uuid = ?', self.uuid]
end
end
-
- def assign_created_job_tasks_qsequence_if_succeeded
- if self.success == false and self.success != self.success_was
- # xxx qsequence should be sequential as advertised; for now at
- # least it's non-decreasing.
- JobTask.update_all(['qsequence = ?', (Time.now.to_f*10000000).to_i],
- ['created_by_job_task_uuid = ?', self.uuid])
- end
- end
end
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