[ARVADOS] updated: daaaeac3d97f75e7750091623025d93f2aa01382

git at public.curoverse.com git at public.curoverse.com
Tue Jul 8 08:48:03 EDT 2014


Summary of changes:
 crunch_scripts/arvados-bcbio-nextgen.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

       via  daaaeac3d97f75e7750091623025d93f2aa01382 (commit)
      from  ee4212cfcef60795c229602a4e585cf36ce71c99 (commit)

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commit daaaeac3d97f75e7750091623025d93f2aa01382
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Jul 8 08:47:59 2014 -0400

    missing paren typo in arvados-bcbio-nextgen.py.  refs #2991

diff --git a/crunch_scripts/arvados-bcbio-nextgen.py b/crunch_scripts/arvados-bcbio-nextgen.py
index 8b69626..df66cf6 100755
--- a/crunch_scripts/arvados-bcbio-nextgen.py
+++ b/crunch_scripts/arvados-bcbio-nextgen.py
@@ -95,7 +95,7 @@ details:
 ''')
 
 os.unlink("/usr/local/share/bcbio-nextgen/gemini_data")
-os.symlink(arvados.get_job_param_mount("gemini_data", "/usr/local/share/bcbio-nextgen/gemini_data")
+os.symlink(arvados.get_job_param_mount("gemini_data"), "/usr/local/share/bcbio-nextgen/gemini_data")
 
 os.chdir(arvados.current_task().tmpdir)
 

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