[ARVADOS] updated: daaaeac3d97f75e7750091623025d93f2aa01382
git at public.curoverse.com
git at public.curoverse.com
Tue Jul 8 08:48:03 EDT 2014
Summary of changes:
crunch_scripts/arvados-bcbio-nextgen.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
via daaaeac3d97f75e7750091623025d93f2aa01382 (commit)
from ee4212cfcef60795c229602a4e585cf36ce71c99 (commit)
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commit daaaeac3d97f75e7750091623025d93f2aa01382
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Tue Jul 8 08:47:59 2014 -0400
missing paren typo in arvados-bcbio-nextgen.py. refs #2991
diff --git a/crunch_scripts/arvados-bcbio-nextgen.py b/crunch_scripts/arvados-bcbio-nextgen.py
index 8b69626..df66cf6 100755
--- a/crunch_scripts/arvados-bcbio-nextgen.py
+++ b/crunch_scripts/arvados-bcbio-nextgen.py
@@ -95,7 +95,7 @@ details:
''')
os.unlink("/usr/local/share/bcbio-nextgen/gemini_data")
-os.symlink(arvados.get_job_param_mount("gemini_data", "/usr/local/share/bcbio-nextgen/gemini_data")
+os.symlink(arvados.get_job_param_mount("gemini_data"), "/usr/local/share/bcbio-nextgen/gemini_data")
os.chdir(arvados.current_task().tmpdir)
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