[ARVADOS] updated: 4a25da032d4de7452c498b9720ce0e294bd03816

[git at public.curoverse.com]

Summary of changes:
 crunch_scripts/arvados-bcbio-nextgen.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

       via  4a25da032d4de7452c498b9720ce0e294bd03816 (commit)
      from  1875ddb761e4ae2909d2afe0718f3d0ad5f3ce0f (commit)

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commit 4a25da032d4de7452c498b9720ce0e294bd03816
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Mon Jul 7 11:26:24 2014 -0400

    Bugfix os.environ() -> os.environ[] no issue #

diff --git a/crunch_scripts/arvados-bcbio-nextgen.py b/crunch_scripts/arvados-bcbio-nextgen.py
index cb5eafe..0d3618b 100755
--- a/crunch_scripts/arvados-bcbio-nextgen.py
+++ b/crunch_scripts/arvados-bcbio-nextgen.py
@@ -102,4 +102,4 @@ os.chdir("project1/work")
 
 os.symlink("/usr/local/share/bcbio-nextgen/galaxy/tool-data", "tool-data")
 
-rcode = subprocess.call(["bcbio_nextgen.py", "../config/project1.yaml", "-n", os.environ('CRUNCH_NODE_SLOTS')])
+rcode = subprocess.call(["bcbio_nextgen.py", "../config/project1.yaml", "-n", os.environ['CRUNCH_NODE_SLOTS']])

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