[ARVADOS] updated: b7de0ac72fe6e5270d58940f782e630789391f05

[git at public.curoverse.com]

Summary of changes:
 crunch_scripts/run-command                         | 23 +++++++++--
 docker/bcbio-nextgen/Dockerfile                    | 47 ++++++++++++++++++++++
 docker/build_tools/Makefile                        | 16 ++++++--
 .../{bwa-samtools => java-bwa-samtools}/Dockerfile |  3 +-
 docker/jobs/Dockerfile                             |  6 +--
 sdk/cli/bin/crunch-job                             | 24 +++++------
 6 files changed, 95 insertions(+), 24 deletions(-)
 create mode 100644 docker/bcbio-nextgen/Dockerfile
 rename docker/{bwa-samtools => java-bwa-samtools}/Dockerfile (90%)

       via  b7de0ac72fe6e5270d58940f782e630789391f05 (commit)
       via  2833e72b9373d50b232d248b04e8154fbdc220ff (commit)
       via  a4daf2cf097005a45ea7727a3c6e33abba8c39d4 (commit)
       via  0b8f1f94be9f49e7a65f5ca84fe563918861be24 (commit)
       via  d62d420af90a635da0593fd1e9bc5650b57ba2bd (commit)
       via  4689df784ce9702958361952b80f24076ea92039 (commit)
       via  01f05d1fd88b17f88eb671984c8ceab49e6ef3d4 (commit)
       via  f007a9c4cf2a5c32cddf1a5d1fa652b7acb05380 (commit)
       via  31351d3a55ca31c97a6f098a897a1179caacd701 (commit)
       via  945bebae56ec2fb5faef965cbf55fc8309e8df11 (commit)
       via  2d7610520e4d1ab289899821bf4d885b77a1e327 (commit)
       via  497851073641c8486ece1a0e5066aeca6e51f7a8 (commit)
       via  99a349f41ad1cc85865ceb1aa7485ceead70ff54 (commit)
       via  bcff555f9786f24ded842f1cf45e162f1a744c32 (commit)
       via  7f67cf41cb8f834debddc5c2a26abdd72e6278d4 (commit)
       via  3369c8fa24b8cb40c9f9da74a1744130e0aea83e (commit)
       via  9cb30aa6a84d5b3c7a3ae0d4fc398d64cbd6c306 (commit)
       via  cb05caebb2978eb19a93e9156aafba71e9aaa82a (commit)
       via  2456d3322ba8397401d5033e6509cf0ffc59f98e (commit)
      from  69b45719b95e59c3293fd8a6003d72c4d0b9d9c7 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit b7de0ac72fe6e5270d58940f782e630789391f05
Merge: 2833e72 a4daf2c
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Thu Jul 3 22:54:21 2014 -0400

    Merge branch '2991-job-docker-images' refs #2991


commit 2833e72b9373d50b232d248b04e8154fbdc220ff
Merge: 69b4571 4689df7
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Thu Jul 3 22:51:59 2014 -0400

    Merge branch '2342-run-command-wrapper' refs #2342


-----------------------------------------------------------------------


hooks/post-receive
--