[ARVADOS] updated: f888eee63ff962201154114efae87f3342ec2aa7

[git at public.curoverse.com]

Summary of changes:
 crunch_scripts/arvados-bcbio-nextgen.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

       via  f888eee63ff962201154114efae87f3342ec2aa7 (commit)
      from  f99d19546774d0204249affe0961000043a2ad11 (commit)

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commit f888eee63ff962201154114efae87f3342ec2aa7
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Wed Jul 2 16:23:45 2014 -0400

    fix config copy

diff --git a/crunch_scripts/arvados-bcbio-nextgen.py b/crunch_scripts/arvados-bcbio-nextgen.py
index 30a1e2f..b8fb76f 100755
--- a/crunch_scripts/arvados-bcbio-nextgen.py
+++ b/crunch_scripts/arvados-bcbio-nextgen.py
@@ -15,7 +15,7 @@ t = arvados.current_task().tmpdir
 
 os.unlink("/usr/local/share/bcbio-nextgen/galaxy")
 os.mkdir("/usr/local/share/bcbio-nextgen/galaxy")
-shutil.copy("/usr/local/share/bcbio-nextgen/galaxy/config/bcbio_system.yaml", "/usr/local/share/bcbio-nextgen/galaxy")
+shutil.copy("/usr/local/share/bcbio-nextgen/config/bcbio_system.yaml", "/usr/local/share/bcbio-nextgen/galaxy")
 
 os.mkdir("/usr/local/share/bcbio-nextgen/galaxy/tool-data")
 

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