[ARVADOS] updated: c1966ec1c6a63b81202131ad372bb4b6bc45742c
git at public.curoverse.com
git at public.curoverse.com
Tue Jul 1 13:13:12 EDT 2014
Summary of changes:
.../images/{ajax-loader.gif => spinner_32px.gif} | Bin
.../app/assets/javascripts/infinite_scroll.js | 21 +-
.../app/assets/javascripts/select_modal.js | 2 +-
.../{loading.css => loading.css.scss.erb} | 21 ++
.../app/controllers/application_controller.rb | 195 ++++++------
.../app/controllers/collections_controller.rb | 16 +-
apps/workbench/app/helpers/application_helper.rb | 2 +-
apps/workbench/app/models/arvados_api_client.rb | 83 +++--
apps/workbench/app/models/arvados_base.rb | 2 +-
apps/workbench/app/views/application/404.html.erb | 21 ++
.../application/{error.json.erb => 404.json.erb} | 0
.../workbench/app/views/application/_choose.js.erb | 2 +-
.../app/views/application/_content.html.erb | 2 +-
.../app/views/application/api_error.html.erb | 23 ++
.../{error.json.erb => api_error.json.erb} | 0
apps/workbench/app/views/jobs/_show_log.html.erb | 22 +-
.../app/views/layouts/application.html.erb | 2 -
.../test/functional/application_controller_test.rb | 7 +
.../test/functional/collections_controller_test.rb | 7 +
.../test/functional/users_controller_test.rb | 2 +-
apps/workbench/test/integration/errors_test.rb | 61 +++-
docker/api/Dockerfile | 4 +-
.../api/application.yml.in | 13 +-
docker/api/passenger.conf | 4 +-
docker/api/production.rb.in | 100 ------
docker/api/secret_token.rb.in | 12 -
docker/arvdock | 336 +++++++++++----------
docker/build_tools/Makefile | 40 +--
docker/build_tools/build.rb | 29 +-
docker/bwa-samtools/Dockerfile | 21 ++
docker/keep/Dockerfile | 14 +
docker/mkimage-debootstrap.sh | 18 +-
docker/sso/passenger.conf | 4 +-
docker/warehouse/Dockerfile | 28 --
docker/warehouse/supervisor.conf | 3 -
docker/warehouse/warehouse.conf.in | 12 -
docker/workbench/Dockerfile | 5 +-
docker/workbench/apache2_foreground.sh | 5 +
.../workbench/application.yml.in | 15 +-
docker/workbench/passenger.conf | 4 +-
sdk/cli/bin/arv | 20 +-
sdk/cli/bin/crunch-job | 2 +
services/api/Gemfile | 2 +-
services/api/Gemfile.lock | 6 +-
.../api/app/controllers/application_controller.rb | 60 ++--
.../v1/api_client_authorizations_controller.rb | 3 +-
.../app/controllers/arvados/v1/jobs_controller.rb | 5 +-
.../app/controllers/arvados/v1/links_controller.rb | 3 +-
services/api/script/crunch-dispatch.rb | 2 +-
.../test/fixtures/api_client_authorizations.yml | 7 +
.../test/functional/application_controller_test.rb | 49 +++
services/fuse/bin/arv-mount | 26 +-
52 files changed, 771 insertions(+), 572 deletions(-)
rename apps/workbench/app/assets/images/{ajax-loader.gif => spinner_32px.gif} (100%)
rename apps/workbench/app/assets/stylesheets/{loading.css => loading.css.scss.erb} (78%)
create mode 100644 apps/workbench/app/views/application/404.html.erb
copy apps/workbench/app/views/application/{error.json.erb => 404.json.erb} (100%)
create mode 100644 apps/workbench/app/views/application/api_error.html.erb
copy apps/workbench/app/views/application/{error.json.erb => api_error.json.erb} (100%)
copy services/api/config/application.yml.example => docker/api/application.yml.in (78%)
delete mode 100644 docker/api/production.rb.in
delete mode 100644 docker/api/secret_token.rb.in
create mode 100644 docker/bwa-samtools/Dockerfile
create mode 100644 docker/keep/Dockerfile
delete mode 100644 docker/warehouse/Dockerfile
delete mode 100644 docker/warehouse/supervisor.conf
delete mode 100644 docker/warehouse/warehouse.conf.in
copy apps/workbench/config/application.yml.example => docker/workbench/application.yml.in (60%)
create mode 100644 services/api/test/functional/application_controller_test.rb
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