[ARVADOS] updated: 88b9bd0d114334e1b73ebd620f6524f17b9a48db

[git at public.curoverse.com]

Summary of changes:
 doc/user/tutorials/tutorial-keep.textile |   10 +++++-----
 1 files changed, 5 insertions(+), 5 deletions(-)

       via  88b9bd0d114334e1b73ebd620f6524f17b9a48db (commit)
       via  5d0e8c1b5eaf6534a0422470889c680ea5a2cc62 (commit)
       via  a4eed7a6cc62e05553796a7cee0a7713e735a726 (commit)
      from  89397b66ebc9b8ec82d806fe6a2af2bbefd01161 (commit)

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commit 88b9bd0d114334e1b73ebd620f6524f17b9a48db
Merge: 5d0e8c1 89397b6
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Jan 17 16:58:41 2014 -0500

    Merge branch 'master' of git.clinicalfuture.com:arvados


commit 5d0e8c1b5eaf6534a0422470889c680ea5a2cc62
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Jan 17 16:58:07 2014 -0500

    Changed upload path in scp command to load to /scratch/you instead of just /scratch, tweaked markup to try and emphasize that "you" that should be replaced by your own username.

diff --git a/doc/user/tutorials/tutorial-keep.textile b/doc/user/tutorials/tutorial-keep.textile
index fbdec14..9922b04 100644
--- a/doc/user/tutorials/tutorial-keep.textile
+++ b/doc/user/tutorials/tutorial-keep.textile
@@ -25,13 +25,13 @@ We will start with downloading a freely available VCF file from the "Personal Ge
 
 First, log into the Arvados VM instance and set up the staging area:
 
-notextile. <pre><code>$ <span class="userinput">mkdir /scratch/$USER</span></code></pre>
+notextile. <pre><code>$ <span class="userinput">mkdir /scratch/<b>you</b></span></code></pre>
 
 Next, download the file:
 
 <notextile>
-<pre><code>$ <span class="userinput">mkdir /scratch/$USER</span>
-$ <span class="userinput">cd /scratch/$USER</span>
+<pre><code>$ <span class="userinput">mkdir /scratch/<b>you</b></span>
+$ <span class="userinput">cd /scratch/<b>you</b></span>
 $ <span class="userinput">curl -o var-GS000016015-ASM.tsv.bz2 'https://warehouse.personalgenomes.org/warehouse/f815ec01d5d2f11cb12874ab2ed50daa+234+K@ant/var-GS000016015-ASM.tsv.bz2'</span>
   % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                  Dload  Upload   Total   Spent    Left  Speed
@@ -41,12 +41,12 @@ $ <span class="userinput">curl -o var-GS000016015-ASM.tsv.bz2 'https://warehouse
 
 Alternately, if you have your own data, for example @MyData.vcf@, you can use @scp@ or @rsync@ to copy from your local workstation to the shell VM (run this on your local workstation):
 
-notextile. <pre><code>$ <span class="userinput">scp MyData.vcf <b>you at shell</b>.arvados:/scratch/MyData.vcf</span></code></pre>
+notextile. <pre><code>$ <span class="userinput">scp MyData.vcf <b>you at shell</b>.arvados:/scratch/<b>you</b>/MyData.vcf</span></code></pre>
 
 Now use @arv keep put@ to add your VCF data to Keep:
 
 <notextile>
-<pre><code>$ <span class="userinput">cd /scratch/$USER</span>
+<pre><code>$ <span class="userinput">cd /scratch/<b>you</b></span>
 $ <span class="userinput">arv keep put var-GS000016015-ASM.tsv.bz2</span>
 c1bad4b39ca5a924e481008009d94e32+210
 </code></pre>

commit a4eed7a6cc62e05553796a7cee0a7713e735a726
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Fri Jan 17 16:43:50 2014 -0500

    Removed spurious '>' (typo)

diff --git a/doc/user/tutorials/tutorial-keep.textile b/doc/user/tutorials/tutorial-keep.textile
index fab979e..fbdec14 100644
--- a/doc/user/tutorials/tutorial-keep.textile
+++ b/doc/user/tutorials/tutorial-keep.textile
@@ -41,7 +41,7 @@ $ <span class="userinput">curl -o var-GS000016015-ASM.tsv.bz2 'https://warehouse
 
 Alternately, if you have your own data, for example @MyData.vcf@, you can use @scp@ or @rsync@ to copy from your local workstation to the shell VM (run this on your local workstation):
 
-notextile. <pre><code>$ <span class="userinput">scp MyData.vcf <b>you at shell</b>.arvados>:/scratch/MyData.vcf</span></code></pre>
+notextile. <pre><code>$ <span class="userinput">scp MyData.vcf <b>you at shell</b>.arvados:/scratch/MyData.vcf</span></code></pre>
 
 Now use @arv keep put@ to add your VCF data to Keep:
 

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