[ARVADOS] updated: 21cdd54adbe64f5013f1081d6e2f0ba5987fb56d
git at public.curoverse.com
git at public.curoverse.com
Mon Feb 17 10:25:45 EST 2014
Summary of changes:
.../app/assets/stylesheets/application.css.scss | 14 +
.../controllers/pipeline_instances_controller.rb | 2 +
apps/workbench/app/helpers/provenance_helper.rb | 12 +-
apps/workbench/app/models/pipeline_instance.rb | 4 +
apps/workbench/app/models/pipeline_template.rb | 3 +
.../app/views/layouts/application.html.erb | 16 +-
...ext_compare.html.erb => _show_compare.html.erb} | 0
.../views/pipeline_instances/_show_graph.html.erb | 19 +-
.../views/pipeline_instances/_show_recent.html.erb | 19 +-
.../views/pipeline_templates/_show_recent.html.erb | 2 +-
apps/workbench/app/views/users/_tables.html.erb | 2 +-
doc/_config.yml | 4 +
doc/_includes/_navbar_left.liquid | 26 +-
doc/_includes/_navbar_top.liquid | 44 +-
doc/_layouts/default.html.liquid | 27 +-
.../badges.css.scss => doc/css/badges.css | 0
doc/css/bootstrap-responsive.min.css | 20 -
doc/css/bootstrap-theme.css | 347 +
doc/css/bootstrap-theme.css.map | 1 +
doc/css/bootstrap-theme.min.css | 7 +
doc/css/bootstrap.css | 9502 ++++++++++----------
doc/css/bootstrap.css.map | 1 +
doc/css/bootstrap.min.css | 7 +
doc/css/nav-list.css | 24 +
doc/fonts/glyphicons-halflings-regular.eot | Bin 0 -> 20290 bytes
doc/fonts/glyphicons-halflings-regular.svg | 229 +
doc/fonts/glyphicons-halflings-regular.ttf | Bin 0 -> 41236 bytes
doc/fonts/glyphicons-halflings-regular.woff | Bin 0 -> 23292 bytes
{apps/workbench/app/assets => doc}/images/dax.png | Bin 66943 -> 66943 bytes
doc/index.html.liquid | 38 +-
...r.html.md => install-api-server.html.md.liquid} | 2 +-
...tml.md => install-workbench-app.html.md.liquid} | 2 +-
doc/js/bootstrap.js | 1951 ++++
doc/js/bootstrap.min.js | 13 +-
.../check-environment.html.textile.liquid | 26 +-
.../getting_started/ssh-access.html.textile.liquid | 16 +-
doc/user/index.html.textile.liquid | 11 +-
doc/user/reference/api-tokens.html.textile.liquid | 63 +-
doc/user/reference/sdk-cli.html.textile.liquid | 64 +-
.../running-external-program.html.textile.liquid | 24 +-
.../tutorial-firstscript.html.textile.liquid | 40 +-
...rial-gatk-variantfiltration.html.textile.liquid | 20 +-
.../tutorial-job-debug.html.textile.liquid | 22 +-
.../tutorials/tutorial-job1.html.textile.liquid | 34 +-
.../tutorials/tutorial-keep.html.textile.liquid | 55 +-
.../tutorial-parallel.html.textile.liquid | 26 +-
.../tutorial-trait-search.html.textile.liquid | 2 +-
docker/README.md | 12 +-
docker/api/Dockerfile | 2 +-
docker/api/apache2_vhost.in | 4 +-
docker/base/Dockerfile | 4 +-
docker/config.rb | 2 +
docker/config.yml.example | 2 +-
docker/doc/Dockerfile | 2 +-
docker/doc/apache2_vhost | 2 +-
docker/passenger/Dockerfile | 2 +-
docker/postgresql/Dockerfile | 2 +-
docker/sso/Dockerfile | 4 +-
docker/sso/apache2_vhost.in | 4 +-
docker/warehouse/Dockerfile | 4 +-
docker/workbench/Dockerfile | 2 +-
docker/workbench/apache2_vhost.in | 2 +-
.../v1/api_client_authorizations_controller.rb | 1 +
.../api_client_authorizations_controller_test.rb | 18 +
.../api_client_authorizations_api_test.rb | 11 +
65 files changed, 7467 insertions(+), 5354 deletions(-)
rename apps/workbench/app/views/pipeline_instances/{_show_text_compare.html.erb => _show_compare.html.erb} (100%)
copy apps/workbench/app/assets/stylesheets/badges.css.scss => doc/css/badges.css (100%)
delete mode 100644 doc/css/bootstrap-responsive.min.css
create mode 100644 doc/css/bootstrap-theme.css
create mode 100644 doc/css/bootstrap-theme.css.map
create mode 100644 doc/css/bootstrap-theme.min.css
create mode 100644 doc/css/bootstrap.css.map
create mode 100644 doc/css/bootstrap.min.css
create mode 100644 doc/css/nav-list.css
create mode 100644 doc/fonts/glyphicons-halflings-regular.eot
create mode 100644 doc/fonts/glyphicons-halflings-regular.svg
create mode 100644 doc/fonts/glyphicons-halflings-regular.ttf
create mode 100644 doc/fonts/glyphicons-halflings-regular.woff
copy {apps/workbench/app/assets => doc}/images/dax.png (100%)
rename doc/install/{install-api-server.html.md => install-api-server.html.md.liquid} (99%)
rename doc/install/{install-workbench-app.html.md => install-workbench-app.html.md.liquid} (98%)
create mode 100644 doc/js/bootstrap.js
create mode 100644 services/api/test/integration/api_client_authorizations_api_test.rb
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commit 21cdd54adbe64f5013f1081d6e2f0ba5987fb56d
Merge: 76811cf ed79eef
Author: Tim Pierce <twp at curoverse.com>
Date: Mon Feb 17 10:25:29 2014 -0500
Merge branch 'master' into 2013-search-all-the-things
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