[ARVADOS] updated: 12df34cfd4be1282b03db76beb85df7709fdf4a0
git at public.curoverse.com
git at public.curoverse.com
Wed Dec 10 14:37:56 EST 2014
Summary of changes:
apps/workbench/Gemfile | 2 +
apps/workbench/Gemfile.lock | 2 +
.../app/assets/javascripts/angular_shim.js | 12 +
.../app/assets/javascripts/application.js | 7 +-
.../app/assets/javascripts/arvados_client.js | 101 +++++
apps/workbench/app/assets/javascripts/tab_panes.js | 2 +-
.../app/assets/javascripts/upload_to_collection.js | 476 +++++++++++++++++++++
.../app/assets/stylesheets/application.css.scss | 15 +-
.../app/controllers/application_controller.rb | 14 +-
.../app/controllers/collections_controller.rb | 4 +-
.../app/views/collections/_show_upload.html.erb | 66 +++
.../app/views/layouts/application.html.erb | 4 +-
.../app/views/projects/_show_dashboard.html.erb | 14 +-
apps/workbench/app/views/projects/show.html.erb | 50 ++-
.../app/views/users/_add_ssh_key_popup.html.erb | 6 +-
.../app/views/users/_manage_ssh_keys.html.erb | 6 +-
.../test/integration/collection_upload_test.rb | 100 +++++
.../workbench/test/integration/collections_test.rb | 2 +-
.../test/integration/pipeline_instances_test.rb | 6 +-
apps/workbench/test/test_helper.rb | 14 +
docker/java-bwa-samtools/Dockerfile | 4 +-
sdk/python/arvados/__init__.py | 1 +
sdk/python/tests/test_sdk.py | 43 ++
.../api_client_authorizations.js.coffee | 3 -
.../app/assets/javascripts/api_clients.js.coffee | 3 -
services/api/app/assets/javascripts/application.js | 9 -
.../assets/javascripts/authorized_keys.js.coffee | 3 -
.../app/assets/javascripts/collections.js.coffee | 3 -
.../assets/javascripts/commit_ancestors.js.coffee | 3 -
.../api/app/assets/javascripts/commits.js.coffee | 3 -
.../api/app/assets/javascripts/groups.js.coffee | 3 -
.../api/app/assets/javascripts/humans.js.coffee | 3 -
.../api/app/assets/javascripts/job_tasks.js.coffee | 3 -
services/api/app/assets/javascripts/jobs.js.coffee | 3 -
.../app/assets/javascripts/keep_disks.js.coffee | 3 -
.../api/app/assets/javascripts/links.js.coffee | 3 -
services/api/app/assets/javascripts/logs.js.coffee | 3 -
services/api/app/assets/javascripts/nodes.js | 17 -
.../api/app/assets/javascripts/nodes.js.coffee | 3 -
.../javascripts/pipeline_instances.js.coffee | 3 -
.../javascripts/pipeline_templates.js.coffee | 3 -
.../app/assets/javascripts/repositories.js.coffee | 3 -
.../api/app/assets/javascripts/specimens.js.coffee | 3 -
.../api/app/assets/javascripts/traits.js.coffee | 3 -
.../assets/javascripts/virtual_machines.js.coffee | 3 -
services/api/test/fixtures/collections.yml | 11 +
.../arvnodeman/computenode/dispatch/__init__.py | 11 +-
.../arvnodeman/computenode/dispatch/slurm.py | 4 +-
services/nodemanager/arvnodeman/config.py | 2 +
services/nodemanager/arvnodeman/daemon.py | 49 ++-
services/nodemanager/arvnodeman/launcher.py | 1 +
services/nodemanager/doc/ec2.example.cfg | 6 +
.../nodemanager/tests/test_computenode_dispatch.py | 13 +-
.../tests/test_computenode_dispatch_slurm.py | 20 +-
services/nodemanager/tests/test_daemon.py | 46 +-
services/nodemanager/tests/testutil.py | 18 +-
56 files changed, 1039 insertions(+), 179 deletions(-)
create mode 100644 apps/workbench/app/assets/javascripts/angular_shim.js
create mode 100644 apps/workbench/app/assets/javascripts/arvados_client.js
create mode 100644 apps/workbench/app/assets/javascripts/upload_to_collection.js
create mode 100644 apps/workbench/app/views/collections/_show_upload.html.erb
create mode 100644 apps/workbench/test/integration/collection_upload_test.rb
create mode 100644 sdk/python/tests/test_sdk.py
delete mode 100644 services/api/app/assets/javascripts/api_client_authorizations.js.coffee
delete mode 100644 services/api/app/assets/javascripts/api_clients.js.coffee
delete mode 100644 services/api/app/assets/javascripts/application.js
delete mode 100644 services/api/app/assets/javascripts/authorized_keys.js.coffee
delete mode 100644 services/api/app/assets/javascripts/collections.js.coffee
delete mode 100644 services/api/app/assets/javascripts/commit_ancestors.js.coffee
delete mode 100644 services/api/app/assets/javascripts/commits.js.coffee
delete mode 100644 services/api/app/assets/javascripts/groups.js.coffee
delete mode 100644 services/api/app/assets/javascripts/humans.js.coffee
delete mode 100644 services/api/app/assets/javascripts/job_tasks.js.coffee
delete mode 100644 services/api/app/assets/javascripts/jobs.js.coffee
delete mode 100644 services/api/app/assets/javascripts/keep_disks.js.coffee
delete mode 100644 services/api/app/assets/javascripts/links.js.coffee
delete mode 100644 services/api/app/assets/javascripts/logs.js.coffee
delete mode 100644 services/api/app/assets/javascripts/nodes.js
delete mode 100644 services/api/app/assets/javascripts/nodes.js.coffee
delete mode 100644 services/api/app/assets/javascripts/pipeline_instances.js.coffee
delete mode 100644 services/api/app/assets/javascripts/pipeline_templates.js.coffee
delete mode 100644 services/api/app/assets/javascripts/repositories.js.coffee
delete mode 100644 services/api/app/assets/javascripts/specimens.js.coffee
delete mode 100644 services/api/app/assets/javascripts/traits.js.coffee
delete mode 100644 services/api/app/assets/javascripts/virtual_machines.js.coffee
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Those revisions listed above that are new to this repository have
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commit 12df34cfd4be1282b03db76beb85df7709fdf4a0
Merge: 9386030 181e90a
Author: Radhika Chippada <radhika at curoverse.com>
Date: Wed Dec 10 14:18:24 2014 -0500
Merge branch 'master' into 4754-performance-benchmarks
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