[ARVADOS] updated: 49fe288ff4d31aacf7a09474a07b35a6c99d165e

[git at public.curoverse.com]

Summary of changes:
 docker/java-bwa-samtools/Dockerfile | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

       via  49fe288ff4d31aacf7a09474a07b35a6c99d165e (commit)
      from  8141501a6ef0a3cf4f40da14671c31c0257472e4 (commit)

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commit 49fe288ff4d31aacf7a09474a07b35a6c99d165e
Author: Ward Vandewege <ward at curoverse.com>
Date:   Wed Dec 10 09:49:09 2014 -0500

    Download bwa and samtools from a self-hosted mirror, sf.net downloads
    are way too unreliable.
    
    No issue #

diff --git a/docker/java-bwa-samtools/Dockerfile b/docker/java-bwa-samtools/Dockerfile
index 5dae9a6..713ef21 100644
--- a/docker/java-bwa-samtools/Dockerfile
+++ b/docker/java-bwa-samtools/Dockerfile
@@ -6,14 +6,14 @@ USER root
 RUN apt-get update -qq
 RUN apt-get install -qqy openjdk-7-jre-headless && \
     cd /tmp && \
-    curl --location http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
+    curl --location http://cache.arvados.org/sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
     tar xjf bwa-0.7.9a.tar.bz2 && \
     cd bwa-0.7.9a && \
     make && \
     (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
     rm -r /tmp/bwa-0.7.9a* && \
     cd /tmp && \
-    curl --location http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2 -o samtools-0.1.19.tar.bz2 && \
+    curl --location http://cache.arvados.org/sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2 -o samtools-0.1.19.tar.bz2 && \
     tar xjf samtools-0.1.19.tar.bz2 && \
     cd samtools-0.1.19 && \
     make && \

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