[ARVADOS] updated: ee1b698d98149561c58c7d8c7206d8d4f4dc0bb5
git at public.curoverse.com
git at public.curoverse.com
Tue Aug 12 15:19:42 EDT 2014
Summary of changes:
.../app/assets/javascripts/infinite_scroll.js | 3 +-
.../app/controllers/application_controller.rb | 30 ++++-
.../app/controllers/projects_controller.rb | 82 +++++++++---
.../app/views/application/_content.html.erb | 3 +-
.../app/views/application/_content_layout.html.erb | 15 +--
.../views/application/_tab_line_buttons.html.erb | 0
apps/workbench/app/views/application/show.html.erb | 1 -
.../app/views/collections/_show_files.html.erb | 5 -
.../app/views/collections/_show_recent.html.erb | 13 --
.../workbench/app/views/collections/index.html.erb | 14 ++
apps/workbench/app/views/collections/show.html.erb | 7 +-
.../app/views/keep_disks/_content_layout.html.erb | 4 +-
.../views/pipeline_instances/_show_recent.html.erb | 7 -
.../app/views/pipeline_instances/index.html.erb | 8 ++
.../pipeline_templates/_show_components.html.erb | 17 ---
.../{_show_components.html.erb => show.html.erb} | 2 +-
.../views/projects/_show_contents_rows.html.erb | 11 +-
.../views/projects/_show_data_collections.html.erb | 72 +----------
.../projects/_show_jobs_and_pipelines.html.erb | 11 +-
.../views/projects/_show_other_objects.html.erb | 11 +-
.../projects/_show_pipeline_templates.html.erb | 11 +-
.../app/views/projects/_show_sharing.html.erb | 10 +-
.../app/views/projects/_show_subprojects.html.erb | 11 +-
.../app/views/projects/_show_tab_contents.html.erb | 10 +-
...how_data_collections.html.erb => show.html.erb} | 9 +-
.../test/functional/projects_controller_test.rb | 72 ++++++++++-
apps/workbench/test/integration/projects_test.rb | 12 +-
apps/workbench/test/test_helper.rb | 3 +
crunch_scripts/collection-merge | 39 ++----
crunch_scripts/decompress-all.py | 62 +++++++++
crunch_scripts/run-command | 143 +++++++++++++++++----
crunch_scripts/split-fastq.py | 128 ++++++++++++++++++
crunch_scripts/subst.py | 6 +-
docker/jobs/Dockerfile | 4 +-
sdk/cli/bin/arv-run-pipeline-instance | 12 +-
.../arvados/v1/repositories_controller.rb | 10 +-
.../controllers/arvados/v1/schema_controller.rb | 1 +
services/api/app/models/job.rb | 2 +-
services/api/config/application.default.yml | 5 +
services/api/test/fixtures/jobs.yml | 11 ++
services/api/test/fixtures/pipeline_instances.yml | 5 +
41 files changed, 603 insertions(+), 279 deletions(-)
copy services/fuse/tests/__init__.py => apps/workbench/app/views/application/_tab_line_buttons.html.erb (100%)
create mode 100644 apps/workbench/app/views/collections/index.html.erb
create mode 100644 apps/workbench/app/views/pipeline_instances/index.html.erb
copy apps/workbench/app/views/pipeline_templates/{_show_components.html.erb => show.html.erb} (93%)
copy apps/workbench/app/views/projects/{_show_data_collections.html.erb => show.html.erb} (86%)
create mode 100755 crunch_scripts/decompress-all.py
create mode 100755 crunch_scripts/split-fastq.py
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commit ee1b698d98149561c58c7d8c7206d8d4f4dc0bb5
Merge: 95b978d 71ed41b
Author: radhika <radhika at curoverse.com>
Date: Tue Aug 12 15:08:59 2014 -0400
Merge branch 'master' into 3112-report-bug
commit 95b978d86375f8a7d30262ebc41ca250e6dcad4f
Author: radhika <radhika at curoverse.com>
Date: Tue Aug 12 15:05:11 2014 -0400
3112: add source_version to discovery document.
diff --git a/services/api/app/controllers/arvados/v1/schema_controller.rb b/services/api/app/controllers/arvados/v1/schema_controller.rb
index a2a5759..eccee8a 100644
--- a/services/api/app/controllers/arvados/v1/schema_controller.rb
+++ b/services/api/app/controllers/arvados/v1/schema_controller.rb
@@ -15,6 +15,7 @@ class Arvados::V1::SchemaController < ApplicationController
name: "arvados",
version: "v1",
revision: "20131114",
+ source_version: (Rails.application.config.source_version ? Rails.application.config.source_version : "No version information available") + (Rails.application.config.local_modified ? Rails.application.config.local_modified.to_s : ''),
generatedAt: Time.now.iso8601,
title: "Arvados API",
description: "The API to interact with Arvados.",
diff --git a/services/api/config/application.default.yml b/services/api/config/application.default.yml
index c32900c..5eb0357 100644
--- a/services/api/config/application.default.yml
+++ b/services/api/config/application.default.yml
@@ -15,6 +15,7 @@ development:
active_record.auto_explain_threshold_in_seconds: 0.5
assets.compress: false
assets.debug: true
+ local_modified: <%= '-modified' if `git status -s` %>
production:
force_ssl: true
@@ -173,3 +174,7 @@ common:
# to sign session tokens. IMPORTANT: This is a site secret. It
# should be at least 50 characters.
secret_token: ~
+
+ # source_version
+ source_version: <%= `git log -n 1 --format=%H` %>
+ local_modified: false
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