[ARVADOS] updated: 0a53423e423d107e457e1555ce3ec4e9ab2dd911

[git at public.curoverse.com]

Summary of changes:
 crunch_scripts/decompress-all.py | 20 +++++++++++++-------
 1 file changed, 13 insertions(+), 7 deletions(-)

       via  0a53423e423d107e457e1555ce3ec4e9ab2dd911 (commit)
      from  fd7cf52127c9aa905aeae09b13dd4d1ee9f66e1c (commit)

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commit 0a53423e423d107e457e1555ce3ec4e9ab2dd911
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Tue Aug 12 11:42:09 2014 -0400

    3373: Test filename extension before attempting to call dtrx.  Non-zero dtrx exit code is now treated as failure.

diff --git a/crunch_scripts/decompress-all.py b/crunch_scripts/decompress-all.py
index 460425f..9a286b2 100755
--- a/crunch_scripts/decompress-all.py
+++ b/crunch_scripts/decompress-all.py
@@ -45,12 +45,18 @@ if streamname != None:
     os.chdir(streamname)
 else:
     streamname = '.'
-streamreader = filter(lambda s: s.name() == streamname, cr.all_streams())[0]
-filereader = streamreader.files()[filename]
-rc = subprocess.call(["dtrx", "-r", "-n", "-q", arvados.get_task_param_mount('input')])
-if rc == 0:
-    out = arvados.CollectionWriter()
-    out.write_directory_tree(outdir, max_manifest_depth=0)
-    task.set_output(out.finish())
+
+m = re.match(r'\.(gz|Z|bz2|tgz|tbz|zip|rar|7z|cab|deb|rpm|cpio|gem)$', arvados.get_task_param_mount('input'), re.IGNORECASE)
+
+if m != None:
+    rc = subprocess.call(["dtrx", "-r", "-n", "-q", arvados.get_task_param_mount('input')])
+    if rc == 0:
+        out = arvados.CollectionWriter()
+        out.write_directory_tree(outdir, max_manifest_depth=0)
+        task.set_output(out.finish())
+    else:
+        return rc
 else:
+    streamreader = filter(lambda s: s.name() == streamname, cr.all_streams())[0]
+    filereader = streamreader.files()[filename]
     task.set_output(streamname + filereader.as_manifest()[1:])

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