[ARVADOS] updated: 2d8508738cc5ae65818f5e6a0ca4e0af15fb6b0c

[git at public.curoverse.com]

Summary of changes:
 .../test/integration/pipeline_templates_test.rb    |   15 +
 doc/_config.yml                                    |   33 +-
 .../_tutorial_bwa_sortsam_pipeline.liquid          |   65 +
 doc/_includes/_tutorial_expectations.liquid        |    2 +-
 doc/_layouts/default.html.liquid                   |    6 +-
 doc/css/font-awesome.css                           | 1566 ++++++++++++++++++++
 doc/css/nav-list.css                               |    7 +-
 doc/fonts/FontAwesome.otf                          |  Bin 0 -> 75188 bytes
 doc/fonts/fontawesome-webfont.eot                  |  Bin 0 -> 72449 bytes
 doc/fonts/fontawesome-webfont.svg                  |  504 +++++++
 doc/fonts/fontawesome-webfont.ttf                  |  Bin 0 -> 141564 bytes
 doc/fonts/fontawesome-webfont.woff                 |  Bin 0 -> 83760 bytes
 doc/user/copying/copying.html.textile.liquid       |    2 +-
 .../examples/crunch-examples.html.textile.liquid   |    2 +-
 .../check-environment.html.textile.liquid          |    4 +-
 .../getting_started/workbench.html.textile.liquid  |   10 +-
 doc/user/index.html.textile.liquid                 |   29 +-
 doc/user/reference/sdk-cli.html.textile.liquid     |    2 +-
 doc/user/topics/keep.html.textile.liquid           |    8 +-
 ...nning-pipeline-command-line.html.textile.liquid |  117 +-
 .../topics/tutorial-job-debug.html.textile.liquid  |   27 +-
 .../topics/tutorial-parallel.html.textile.liquid   |   24 +-
 .../tutorials/intro-crunch.html.textile.liquid     |   17 +-
 .../running-external-program.html.textile.liquid   |   79 +-
 .../tutorial-firstscript.html.textile.liquid       |   61 +-
 .../tutorial-keep-get.html.textile.liquid          |   47 +
 .../tutorial-keep-mount.html.textile.liquid        |   32 +
 .../tutorials/tutorial-keep.html.textile.liquid    |  161 +-
 .../tutorial-new-pipeline.html.textile.liquid      |   63 +-
 ...tutorial-pipeline-workbench.html.textile.liquid |   40 +-
 sdk/python/arvados/api.py                          |   82 +-
 sdk/python/arvados/errors.py                       |   11 +
 sdk/python/tests/test_api.py                       |   76 +
 services/keep/src/keep/handler_test.go             |  144 +-
 services/keep/src/keep/handlers.go                 |   97 ++
 services/keep/src/keep/volume.go                   |   11 +-
 services/keep/src/keep/volume_unix.go              |   37 +-
 37 files changed, 2855 insertions(+), 526 deletions(-)
 create mode 100644 apps/workbench/test/integration/pipeline_templates_test.rb
 create mode 100644 doc/_includes/_tutorial_bwa_sortsam_pipeline.liquid
 create mode 100644 doc/css/font-awesome.css
 create mode 100644 doc/fonts/FontAwesome.otf
 create mode 100755 doc/fonts/fontawesome-webfont.eot
 create mode 100755 doc/fonts/fontawesome-webfont.svg
 create mode 100755 doc/fonts/fontawesome-webfont.ttf
 create mode 100755 doc/fonts/fontawesome-webfont.woff
 create mode 100644 doc/user/tutorials/tutorial-keep-get.html.textile.liquid
 create mode 100644 doc/user/tutorials/tutorial-keep-mount.html.textile.liquid
 create mode 100644 sdk/python/tests/test_api.py

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commit 2d8508738cc5ae65818f5e6a0ca4e0af15fb6b0c
Merge: 57e0202 4eafb2b
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date:   Wed Aug 6 10:32:01 2014 -0400

    Merge branch 'master' into 3373-improve-gatk3-snv-pipeline


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