[ARVADOS] updated: dc8150c837a7285bf210be54240c03c20dee0af0
git at public.curoverse.com
git at public.curoverse.com
Mon Aug 4 16:58:54 EDT 2014
Summary of changes:
doc/user/tutorials/running-external-program.html.textile.liquid | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
via dc8150c837a7285bf210be54240c03c20dee0af0 (commit)
from 66525e1578a6247f902cd4c215494600302bf857 (commit)
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commit dc8150c837a7285bf210be54240c03c20dee0af0
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Mon Aug 4 16:58:50 2014 -0400
Added explicit instructions on sample data to use for tutorial pipeline.
diff --git a/doc/user/tutorials/running-external-program.html.textile.liquid b/doc/user/tutorials/running-external-program.html.textile.liquid
index 36c7e98..3b9cd16 100644
--- a/doc/user/tutorials/running-external-program.html.textile.liquid
+++ b/doc/user/tutorials/running-external-program.html.textile.liquid
@@ -43,6 +43,11 @@ When using @run-command@, the tool should write its output to the current workin
h2. Running your pipeline
-Your new pipeline template should appear at the top of the Workbench "pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates page. You can run your pipeline "using Workbench":tutorial-pipeline-workbench.html or the "command line.":{{site.baseurl}}/user/topics/running-pipeline-command-line.html Test data is available in the "Arvados Tutorial":https://{{ site.arvados_workbench_host }}/projects/qr1hi-j7d0g-u7zg1qdaowykd8d project.
+Your new pipeline template should appear at the top of the Workbench "pipeline templates":https://{{ site.arvados_workbench_host }}/pipeline_templates page. You can run your pipeline "using Workbench":tutorial-pipeline-workbench.html or the "command line.":{{site.baseurl}}/user/topics/running-pipeline-command-line.html
+
+Test data is available in the "Arvados Tutorial":https://{{ site.arvados_workbench_host }}/projects/qr1hi-j7d0g-u7zg1qdaowykd8d project:
+
+* Choose <i class="fa fa-fw fa-archive"></i> "Tutorial chromosome 19 reference (2463fa9efeb75e099685528b3b9071e0+438)":https://{{ site.arvados_workbench_host }}/collections/2463fa9efeb75e099685528b3b9071e0+438 for the "reference_collection" parameter
+* Choose <i class="fa fa-fw fa-archive"></i> "Tutorial sample exome (3229739b505d2b878b62aed09895a55a+142)":https://{{ site.arvados_workbench_host }}/collections/3229739b505d2b878b62aed09895a55a+142 for the "sample" parameter
For more information and examples for writing pipelines, see the "pipeline template reference":{{site.baseurl}}/api/schema/PipelineTemplate.html
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