[ARVADOS] updated: 1c5176d87df0dbd25db6ff1fb2ab82ae17472145
git at public.curoverse.com
git at public.curoverse.com
Fri Apr 25 13:26:59 EDT 2014
Summary of changes:
.gitignore | 9 +-
apps/workbench/.gitignore | 18 +--
apps/workbench/app/controllers/users_controller.rb | 29 +++-
apps/workbench/app/models/arvados_api_client.rb | 2 +-
apps/workbench/app/models/group.rb | 4 +
apps/workbench/app/models/user.rb | 5 +
.../app/views/layouts/application.html.erb | 1 -
.../app/views/users/_show_activity.html.erb | 2 +-
apps/workbench/app/views/users/activity.html.erb | 16 +-
apps/workbench/app/views/users/storage.html.erb | 66 +++++++
apps/workbench/config/routes.rb | 1 +
apps/workbench/test/test_helper.rb | 16 ++-
apps/workbench/test/unit/user_test.rb | 15 ++-
doc/_config.yml | 2 -
doc/_includes/_tutorial_hash_script_py.liquid | 8 +-
doc/api/methods.html.textile.liquid | 17 +--
.../api_client_authorizations.html.textile.liquid | 37 +----
doc/api/methods/api_clients.html.textile.liquid | 38 +----
.../methods/authorized_keys.html.textile.liquid | 37 +----
doc/api/methods/collections.html.textile.liquid | 38 +----
doc/api/methods/groups.html.textile.liquid | 34 ++---
doc/api/methods/humans.html.textile.liquid | 37 +----
doc/api/methods/job_tasks.html.textile.liquid | 37 +----
doc/api/methods/jobs.html.textile.liquid | 145 ++++++---------
doc/api/methods/keep_disks.html.textile.liquid | 38 +----
doc/api/methods/links.html.textile.liquid | 39 +----
doc/api/methods/logs.html.textile.liquid | 37 +----
doc/api/methods/nodes.html.textile.liquid | 37 +----
.../methods/pipeline_instances.html.textile.liquid | 37 +----
.../methods/pipeline_templates.html.textile.liquid | 37 +----
doc/api/methods/repositories.html.textile.liquid | 37 +----
doc/api/methods/specimens.html.textile.liquid | 37 +----
doc/api/methods/traits.html.textile.liquid | 37 +----
doc/api/methods/users.html.textile.liquid | 33 ++---
.../methods/virtual_machines.html.textile.liquid | 63 +++-----
doc/api/resources.html.textile.liquid | 4 +-
doc/api/schema/ApiClient.html.textile.liquid | 22 +--
.../ApiClientAuthorization.html.textile.liquid | 23 +--
doc/api/schema/AuthorizedKey.html.textile.liquid | 21 +--
doc/api/schema/Collection.html.textile.liquid | 11 +-
doc/api/schema/Commit.html.textile.liquid | 38 ----
doc/api/schema/CommitAncestor.html.textile.liquid | 39 ----
doc/api/schema/Group.html.textile.liquid | 23 +--
doc/api/schema/Human.html.textile.liquid | 23 +--
doc/api/schema/Job.html.textile.liquid | 56 ++----
doc/api/schema/JobTask.html.textile.liquid | 10 +-
doc/api/schema/KeepDisk.html.textile.liquid | 21 +--
doc/api/schema/Link.html.textile.liquid | 16 +-
doc/api/schema/Log.html.textile.liquid | 13 +-
doc/api/schema/Node.html.textile.liquid | 23 +--
.../schema/PipelineInstance.html.textile.liquid | 23 +--
.../schema/PipelineTemplate.html.textile.liquid | 25 +--
doc/api/schema/Repository.html.textile.liquid | 21 +--
doc/api/schema/Specimen.html.textile.liquid | 23 +--
doc/api/schema/Trait.html.textile.liquid | 23 +--
doc/api/schema/User.html.textile.liquid | 23 +--
doc/api/schema/VirtualMachine.html.textile.liquid | 21 +--
.../create-standard-objects.html.textile.liquid | 10 +-
doc/install/install-api-server.html.textile.liquid | 87 +++++++---
.../install-crunch-dispatch.html.textile.liquid | 2 +-
.../install-workbench-app.html.textile.liquid | 42 ++++-
.../getting_started/ssh-access.html.textile.liquid | 42 +++---
doc/user/index.html.textile.liquid | 10 +-
doc/user/reference/api-tokens.html.textile.liquid | 2 +-
doc/user/topics/keep.html.textile.liquid | 4 +-
...nning-pipeline-command-line.html.textile.liquid | 4 +-
.../topics/tutorial-job-debug.html.textile.liquid | 6 +-
doc/user/topics/tutorial-job1.html.textile.liquid | 10 +-
.../topics/tutorial-parallel.html.textile.liquid | 8 +-
.../tutorial-trait-search.html.textile.liquid | 28 ++--
.../tutorials/intro-crunch.html.textile.liquid | 2 +-
.../running-external-program.html.textile.liquid | 6 +-
.../tutorial-firstscript.html.textile.liquid | 24 ++--
.../tutorials/tutorial-keep.html.textile.liquid | 4 +-
.../tutorial-new-pipeline.html.textile.liquid | 6 +-
sdk/cli/bin/arv-run-pipeline-instance | 38 +++--
services/api/.gitignore | 20 +--
.../api/app/controllers/api_clients_controller.rb | 2 -
.../api/app/controllers/application_controller.rb | 191 ++++++++++++++------
.../app/controllers/arvados/v1/jobs_controller.rb | 31 ++--
.../api/app/controllers/collections_controller.rb | 2 -
.../app/controllers/commit_ancestors_controller.rb | 2 -
services/api/app/controllers/commits_controller.rb | 2 -
services/api/app/controllers/nodes_controller.rb | 30 ---
.../controllers/pipeline_instances_controller.rb | 2 -
services/api/app/controllers/users_controller.rb | 2 -
services/api/app/models/group.rb | 1 +
services/api/app/models/job.rb | 2 +-
services/api/app/models/pipeline_instance.rb | 2 +-
services/api/config/application.rb | 2 +
services/api/config/database.yml.sample | 8 +-
services/api/config/routes.rb | 163 +++++------------
.../20140421140924_add_group_class_to_groups.rb | 6 +
.../migrate/20140421151940_timestamps_not_null.rb | 13 ++
services/api/db/schema.rb | 32 ++--
services/api/lib/assign_uuid.rb | 11 +-
services/api/lib/common_api_template.rb | 1 -
services/api/test/fixtures/groups.yml | 24 +++
services/api/test/fixtures/links.yml | 14 ++
services/api/test/fixtures/pipeline_instances.yml | 19 ++-
services/api/test/fixtures/specimens.yml | 12 ++
.../api/test/functional/admin_notifier_test.rb | 7 -
.../arvados/v1/collections_controller_test.rb | 6 +-
.../arvados/v1/groups_controller_test.rb | 112 ++++++++++++
.../arvados/v1/job_reuse_controller_test.rb | 132 ++++++++++++--
.../arvados/v1/keep_disks_controller_test.rb | 2 +-
.../functional/arvados/v1/links_controller_test.rb | 2 +-
.../functional/arvados/v1/nodes_controller_test.rb | 4 +-
.../functional/arvados/v1/users_controller_test.rb | 86 +++++++++-
.../functional/commit_ancestors_controller_test.rb | 7 -
.../api/test/functional/commits_controller_test.rb | 7 -
services/api/test/functional/user_notifier_test.rb | 7 -
.../api_client_authorizations_api_test.rb | 6 +-
.../api/test/integration/collections_api_test.rb | 24 ++--
services/api/test/integration/errors_test.rb | 27 +++
services/api/test/integration/jobs_api_test.rb | 4 +-
services/api/test/integration/permissions_test.rb | 12 +-
services/api/test/integration/valid_links_test.rb | 2 +-
services/api/test/test_helper.rb | 8 +-
services/api/test/unit/pipeline_instance_test.rb | 36 +++--
120 files changed, 1324 insertions(+), 1644 deletions(-)
create mode 100644 apps/workbench/app/views/users/storage.html.erb
delete mode 100644 doc/api/schema/Commit.html.textile.liquid
delete mode 100644 doc/api/schema/CommitAncestor.html.textile.liquid
delete mode 100644 services/api/app/controllers/api_clients_controller.rb
delete mode 100644 services/api/app/controllers/collections_controller.rb
delete mode 100644 services/api/app/controllers/commit_ancestors_controller.rb
delete mode 100644 services/api/app/controllers/commits_controller.rb
delete mode 100644 services/api/app/controllers/nodes_controller.rb
delete mode 100644 services/api/app/controllers/pipeline_instances_controller.rb
delete mode 100644 services/api/app/controllers/users_controller.rb
create mode 100644 services/api/db/migrate/20140421140924_add_group_class_to_groups.rb
create mode 100644 services/api/db/migrate/20140421151940_timestamps_not_null.rb
delete mode 100644 services/api/test/functional/admin_notifier_test.rb
delete mode 100644 services/api/test/functional/commit_ancestors_controller_test.rb
delete mode 100644 services/api/test/functional/commits_controller_test.rb
delete mode 100644 services/api/test/functional/user_notifier_test.rb
create mode 100644 services/api/test/integration/errors_test.rb
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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
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commit 1c5176d87df0dbd25db6ff1fb2ab82ae17472145
Merge: 5d356c8 6d2128a
Author: Tom Clegg <tom at curoverse.com>
Date: Fri Apr 25 13:26:43 2014 -0400
Merge branch 'master' into 1969-persistent-switch
Conflicts:
services/api/app/controllers/application_controller.rb
diff --cc services/api/app/controllers/application_controller.rb
index 4e7b73b,6339125..6907faf
--- a/services/api/app/controllers/application_controller.rb
+++ b/services/api/app/controllers/application_controller.rb
@@@ -202,10 -315,7 +315,10 @@@ class ApplicationController < ActionCon
value[0] == 'contains' then
ilikes = []
model_class.searchable_columns('ilike').each do |column|
+ # Including owner_uuid in an "any column" search will
+ # probably just return a lot of false positives.
+ next if column == 'owner_uuid'
- ilikes << "#{table_name}.#{column} ilike ?"
+ ilikes << "#{ar_table_name}.#{column} ilike ?"
conditions << "%#{value[1]}%"
end
if ilikes.any?
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