[ARVADOS] updated: 6d2128ae15825ef03472897e09710b176e3cc1d9
git at public.curoverse.com
git at public.curoverse.com
Fri Apr 25 13:19:10 EDT 2014
Summary of changes:
.gitignore | 9 +-
apps/workbench/.gitignore | 18 +--
doc/_config.yml | 2 -
doc/_includes/_tutorial_hash_script_py.liquid | 8 +-
doc/api/methods.html.textile.liquid | 17 +--
.../api_client_authorizations.html.textile.liquid | 37 +-----
doc/api/methods/api_clients.html.textile.liquid | 38 +-----
.../methods/authorized_keys.html.textile.liquid | 37 +-----
doc/api/methods/collections.html.textile.liquid | 38 +-----
doc/api/methods/groups.html.textile.liquid | 28 +----
doc/api/methods/humans.html.textile.liquid | 37 +-----
doc/api/methods/job_tasks.html.textile.liquid | 37 +-----
doc/api/methods/jobs.html.textile.liquid | 145 ++++++++------------
doc/api/methods/keep_disks.html.textile.liquid | 38 +-----
doc/api/methods/links.html.textile.liquid | 39 +-----
doc/api/methods/logs.html.textile.liquid | 37 +-----
doc/api/methods/nodes.html.textile.liquid | 37 +-----
.../methods/pipeline_instances.html.textile.liquid | 37 +-----
.../methods/pipeline_templates.html.textile.liquid | 37 +-----
doc/api/methods/repositories.html.textile.liquid | 37 +-----
doc/api/methods/specimens.html.textile.liquid | 37 +-----
doc/api/methods/traits.html.textile.liquid | 37 +-----
doc/api/methods/users.html.textile.liquid | 27 +----
.../methods/virtual_machines.html.textile.liquid | 63 +++------
doc/api/resources.html.textile.liquid | 4 +-
doc/api/schema/ApiClient.html.textile.liquid | 22 +---
.../ApiClientAuthorization.html.textile.liquid | 23 +---
doc/api/schema/AuthorizedKey.html.textile.liquid | 21 +---
doc/api/schema/Collection.html.textile.liquid | 11 +-
doc/api/schema/Commit.html.textile.liquid | 38 -----
doc/api/schema/CommitAncestor.html.textile.liquid | 39 ------
doc/api/schema/Group.html.textile.liquid | 17 +--
doc/api/schema/Human.html.textile.liquid | 23 +---
doc/api/schema/Job.html.textile.liquid | 56 +++------
doc/api/schema/JobTask.html.textile.liquid | 10 +-
doc/api/schema/KeepDisk.html.textile.liquid | 21 +---
doc/api/schema/Link.html.textile.liquid | 8 +-
doc/api/schema/Log.html.textile.liquid | 13 +--
doc/api/schema/Node.html.textile.liquid | 23 +---
.../schema/PipelineInstance.html.textile.liquid | 23 +---
.../schema/PipelineTemplate.html.textile.liquid | 25 +---
doc/api/schema/Repository.html.textile.liquid | 21 +---
doc/api/schema/Specimen.html.textile.liquid | 23 +---
doc/api/schema/Trait.html.textile.liquid | 23 +---
doc/api/schema/User.html.textile.liquid | 23 +---
doc/api/schema/VirtualMachine.html.textile.liquid | 21 +---
.../create-standard-objects.html.textile.liquid | 10 +-
doc/install/install-api-server.html.textile.liquid | 87 ++++++++----
.../install-crunch-dispatch.html.textile.liquid | 2 +-
.../install-workbench-app.html.textile.liquid | 42 +++++-
.../getting_started/ssh-access.html.textile.liquid | 42 +++---
doc/user/index.html.textile.liquid | 10 +-
doc/user/reference/api-tokens.html.textile.liquid | 2 +-
doc/user/topics/keep.html.textile.liquid | 4 +-
...nning-pipeline-command-line.html.textile.liquid | 4 +-
.../topics/tutorial-job-debug.html.textile.liquid | 6 +-
doc/user/topics/tutorial-job1.html.textile.liquid | 10 +-
.../topics/tutorial-parallel.html.textile.liquid | 8 +-
.../tutorial-trait-search.html.textile.liquid | 28 ++--
.../tutorials/intro-crunch.html.textile.liquid | 2 +-
.../running-external-program.html.textile.liquid | 6 +-
.../tutorial-firstscript.html.textile.liquid | 24 ++--
.../tutorials/tutorial-keep.html.textile.liquid | 4 +-
.../tutorial-new-pipeline.html.textile.liquid | 6 +-
sdk/cli/bin/arv-run-pipeline-instance | 38 ++++--
services/api/.gitignore | 20 +---
.../app/controllers/arvados/v1/jobs_controller.rb | 31 +++--
services/api/app/models/job.rb | 2 +-
services/api/config/database.yml.sample | 8 +-
services/api/lib/common_api_template.rb | 1 -
.../arvados/v1/job_reuse_controller_test.rb | 132 +++++++++++++++---
.../functional/arvados/v1/links_controller_test.rb | 2 +-
72 files changed, 582 insertions(+), 1314 deletions(-)
delete mode 100644 doc/api/schema/Commit.html.textile.liquid
delete mode 100644 doc/api/schema/CommitAncestor.html.textile.liquid
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from d61f56590d4c1bc2c965b640698217a5d4af1d8c (commit)
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commit 6d2128ae15825ef03472897e09710b176e3cc1d9
Merge: d61f565 25e42ea
Author: Tom Clegg <tom at curoverse.com>
Date: Fri Apr 25 12:56:02 2014 -0400
Merge branch '2505-update-docs'
refs #2505
Conflicts:
doc/api/methods/groups.html.textile.liquid
doc/api/methods/users.html.textile.liquid
doc/api/schema/Group.html.textile.liquid
diff --cc doc/api/methods/groups.html.textile.liquid
index 7f52bc7,d2a2eee..9394d76
--- a/doc/api/methods/groups.html.textile.liquid
+++ b/doc/api/methods/groups.html.textile.liquid
@@@ -72,32 -54,8 +54,30 @@@ table(table table-bordered table-conden
|_. Argument |_. Type |_. Description |_. Location |_. Example |
|limit|integer (default 100)|Maximum number of groups to return.|query||
|order|string|Order in which to return matching groups.|query||
- |pageToken|string|Page token.|query||
- |q|string|Query string for searching groups.|query||
- |where|object|Conditions for filtering groups.|query||
+ |filters|array|Conditions for filtering groups.|query||
+h2. owned_items
+
+Retrieve a list of items which are owned by the given group.
+
+Arguments:
+
+table(table table-bordered table-condensed).
+|_. Argument |_. Type |_. Description |_. Location |_. Example |
+{background:#ccffcc}.|uuid|string|The UUID of the group in question.|path||
+|include_linked|boolean|If true, results will also include items on which the given group has _can_manage_ permission, even if they are owned by different users/groups.|path|{white-space:nowrap}. @false@ (default)
+ at true@|
+
+h2. show
+
+show groups
+
+Arguments:
+
+table(table table-bordered table-condensed).
+|_. Argument |_. Type |_. Description |_. Location |_. Example |
+{background:#ccffcc}.|uuid|string||path||
+
h2. update
Update attributes of an existing Group.
diff --cc doc/api/methods/users.html.textile.liquid
index 5fcc4c8,c707f12..65bd696
--- a/doc/api/methods/users.html.textile.liquid
+++ b/doc/api/methods/users.html.textile.liquid
@@@ -91,32 -72,8 +72,30 @@@ table(table table-bordered table-conden
|_. Argument |_. Type |_. Description |_. Location |_. Example |
|limit|integer (default 100)|Maximum number of users to return.|query||
|order|string|Order in which to return matching users.|query||
- |pageToken|string|Page token.|query||
- |q|string|Query string for searching users.|query||
- |where|object|Conditions for filtering users.|query||
+ |filters|array|Conditions for filtering users.|query||
+h2. owned_items
+
+Retrieve a list of items which are owned by the given user.
+
+Arguments:
+
+table(table table-bordered table-condensed).
+|_. Argument |_. Type |_. Description |_. Location |_. Example |
+{background:#ccffcc}.|uuid|string|The UUID of the user in question.|path||
+|include_linked|boolean|If true, results will also include items on which the given user has _can_manage_ permission, even if they are owned by different users/groups.|path|{white-space:nowrap}. @false@ (default)
+ at true@|
+
+h2. show
+
+show users
+
+Arguments:
+
+table(table table-bordered table-condensed).
+|_. Argument |_. Type |_. Description |_. Location |_. Example |
+{background:#ccffcc}.|uuid|string||path||
+
h2. system
system users
diff --cc doc/api/schema/Group.html.textile.liquid
index 624a930,f01b75b..4613326
--- a/doc/api/schema/Group.html.textile.liquid
+++ b/doc/api/schema/Group.html.textile.liquid
@@@ -6,32 -6,15 +6,19 @@@ title: Grou
...
+A **Group** represents a set of objects. Groups allow you to organize content, define user roles, and apply permissions to sets of objects.
+
h2. Methods
- See "REST methods for working with Arvados resources":{{site.baseurl}}/api/methods.html
+ See "groups":{{site.baseurl}}/api/methods/groups.html
- API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/groups@
-
- h2. Creation
-
- h3. Prerequisites
-
- Prerequisites for creating a Group.
-
- h3. Side effects
-
- Side effects of creating a Group.
-
- h2. Resources
+ h2. Resource
Each Group has, in addition to the usual "attributes of Arvados resources":{{site.baseurl}}/api/resources.html:
table(table table-bordered table-condensed).
|_. Attribute|_. Type|_. Description|_. Example|
|name|string|||
+|group_class|string|Type of group. This does not affect behavior, but determines how the group is presented in the user interface. For example, @folder@ indicates that the group should be displayed by Workbench and arv-mount as a folder for organizing and naming objects.|@"folder"@
+null|
|description|text|||
- |updated_at|datetime|||
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