[ARVADOS] updated: b346f8754f5d4840ad80aa97bd910f3a6844b413
git at public.curoverse.com
git at public.curoverse.com
Tue Apr 15 17:20:19 EDT 2014
Summary of changes:
.../app/controllers/application_controller.rb | 1 +
apps/workbench/app/controllers/users_controller.rb | 1 +
apps/workbench/config/application.default.yml | 1 +
.../test/functional/users_controller_test.rb | 16 +++
apps/workbench/test/integration/logins_test.rb | 8 ++
apps/workbench/test/integration_helper.rb | 57 +---------
apps/workbench/test/test_helper.rb | 78 +++++++++++++
services/api/Gemfile | 2 +
services/api/Gemfile.lock | 116 ++++++++++----------
.../api/app/controllers/application_controller.rb | 10 ++
.../app/controllers/arvados/v1/jobs_controller.rb | 2 +-
.../app/controllers/arvados/v1/users_controller.rb | 13 ++
services/api/app/mailers/user_notifier.rb | 8 ++
.../views/user_notifier/account_is_setup.text.erb | 6 +
services/api/config/application.default.yml | 3 +
services/api/config/routes.rb | 2 +
services/api/script/setup-new-user.rb | 9 +-
.../test/fixtures/api_client_authorizations.yml | 6 +
services/api/test/fixtures/jobs.yml | 13 ++
.../arvados/v1/job_reuse_controller_test.rb | 20 +++-
.../functional/arvados/v1/users_controller_test.rb | 58 ++++++++++
.../api/test/functional/user_notifier_test.rb | 2 +-
services/api/test/unit/user_notifier_test.rb | 24 ++++
services/keep/keep.go | 41 ++++++--
services/keep/keep_test.go | 7 +
25 files changed, 379 insertions(+), 125 deletions(-)
create mode 100644 services/api/app/mailers/user_notifier.rb
create mode 100644 services/api/app/views/user_notifier/account_is_setup.text.erb
copy apps/workbench/test/unit/job_task_test.rb => services/api/test/functional/user_notifier_test.rb (61%)
create mode 100644 services/api/test/unit/user_notifier_test.rb
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commit b346f8754f5d4840ad80aa97bd910f3a6844b413
Merge: e681576 c2aeaa7
Author: Tim Pierce <twp at curoverse.com>
Date: Tue Apr 15 17:20:12 2014 -0400
Merge branch 'master' into 2449-keep-index-status-handlers
commit e6815764c940968ed825e8b2e4d984824a68fd23
Author: Tim Pierce <twp at curoverse.com>
Date: Tue Apr 15 17:18:22 2014 -0400
Add a device_num field to status.json output.
Include the underlying device number (as returned by stat(2)) in
status.json output, so clients can see if two Keep directories are
located on the same underlying volume. Refs #2561.
diff --git a/services/keep/keep.go b/services/keep/keep.go
index af8ba2a..91cddcb 100644
--- a/services/keep/keep.go
+++ b/services/keep/keep.go
@@ -226,17 +226,16 @@ func IndexHandler(w http.ResponseWriter, req *http.Request) {
// described in a JSON structure.
//
// The data given in a status.json response includes:
-// time - the time the status was last updated
-// df - the output of the most recent `df --block-size=1k`
-// disk_devices - list of disk device files (i.e. /dev/(s|xv|h)d)
-// dirs - an object describing Keep volumes, keyed on Keep volume dirs,
-// each value is an object describing the status of that volume
-// * status ("full [timestamp]" or "ok [timestamp]")
-// * last_error
-// * last_error_time
+// volumes - a list of Keep volumes currently in use by this server
+// each volume is an object with the following fields:
+// * mount_point
+// * device_num (an integer identifying the underlying filesystem)
+// * bytes_free
+// * bytes_used
//
type VolumeStatus struct {
MountPoint string `json:"mount_point"`
+ DeviceNum uint64 `json:"device_num"`
BytesFree uint64 `json:"bytes_free"`
BytesUsed uint64 `json:"bytes_used"`
}
@@ -275,6 +274,14 @@ func GetNodeStatus() *NodeStatus {
//
func GetVolumeStatus(volume string) *VolumeStatus {
var fs syscall.Statfs_t
+ var devnum uint64
+
+ if fi, err := os.Stat(volume); err == nil {
+ devnum = fi.Sys().(*syscall.Stat_t).Dev
+ } else {
+ log.Printf("GetVolumeStatus: os.Stat: %s\n", err)
+ return nil
+ }
err := syscall.Statfs(volume, &fs)
if err != nil {
@@ -286,7 +293,7 @@ func GetVolumeStatus(volume string) *VolumeStatus {
// uses fs.Blocks - fs.Bfree.
free := fs.Bavail * uint64(fs.Bsize)
used := (fs.Blocks - fs.Bfree) * uint64(fs.Bsize)
- return &VolumeStatus{volume, free, used}
+ return &VolumeStatus{volume, devnum, free, used}
}
// IndexLocators
diff --git a/services/keep/keep_test.go b/services/keep/keep_test.go
index 2d1916e..97fa1c7 100644
--- a/services/keep/keep_test.go
+++ b/services/keep/keep_test.go
@@ -340,6 +340,9 @@ func TestNodeStatus(t *testing.T) {
if mtp != vol {
t.Errorf("GetNodeStatus mount_point %s != KeepVolume %s", mtp, vol)
}
+ if volinfo.DeviceNum == 0 {
+ t.Errorf("uninitialized device_num in %v", volinfo)
+ }
if volinfo.BytesFree == 0 {
t.Errorf("uninitialized bytes_free in %v", volinfo)
}
commit d9f6071c52c33831be88546475480920fe7e1a60
Author: Tim Pierce <twp at curoverse.com>
Date: Tue Apr 15 16:46:57 2014 -0400
Added IsValidLocator to filter /index output.
IndexHandler should skip metadata files and anything else that isn't a
valid locator, so call IsValidLocator before including the file in the
index output. Refs #2561.
diff --git a/services/keep/keep.go b/services/keep/keep.go
index 7323c89..af8ba2a 100644
--- a/services/keep/keep.go
+++ b/services/keep/keep.go
@@ -15,6 +15,7 @@ import (
"net/http"
"os"
"path/filepath"
+ "regexp"
"strconv"
"strings"
"syscall"
@@ -325,6 +326,12 @@ func IndexLocators(prefix string) string {
!strings.HasPrefix(prefix, locator) {
return filepath.SkipDir
}
+ // Skip any file that is not apparently a locator, e.g. .meta files
+ if is_valid, err := IsValidLocator(locator); err != nil {
+ return err
+ } else if !is_valid {
+ return nil
+ }
// Print filenames beginning with prefix
if !info.IsDir() && strings.HasPrefix(locator, prefix) {
output = output + fmt.Sprintf(
@@ -544,3 +551,12 @@ func ReadAtMost(r io.Reader, maxbytes int) ([]byte, error) {
}
return buf, err
}
+
+// IsValidLocator
+// Return true if the specified string is a valid Keep locator.
+// When Keep is extended to support hash types other than MD5,
+// this should be updated to cover those as well.
+//
+func IsValidLocator(loc string) (bool, error) {
+ return regexp.MatchString(`^[0-9a-f]{32}$`, loc)
+}
diff --git a/services/keep/keep_test.go b/services/keep/keep_test.go
index 05eb410..2d1916e 100644
--- a/services/keep/keep_test.go
+++ b/services/keep/keep_test.go
@@ -296,10 +296,14 @@ func TestIndex(t *testing.T) {
defer teardown()
// Set up Keep volumes and populate them.
+ // Include multiple blocks on different volumes, and
+ // some metadata files.
KeepVolumes = setup(t, 2)
store(t, KeepVolumes[0], TEST_HASH, TEST_BLOCK)
store(t, KeepVolumes[1], TEST_HASH_2, TEST_BLOCK_2)
store(t, KeepVolumes[0], TEST_HASH_3, TEST_BLOCK_3)
+ store(t, KeepVolumes[0], TEST_HASH+".meta", []byte("metadata"))
+ store(t, KeepVolumes[1], TEST_HASH_2+".meta", []byte("metadata"))
index := IndexLocators("")
expected := `^` + TEST_HASH + `\+\d+ \d+\n` +
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