[ARVADOS] updated: 97279656db75b9b7f8282e3b98774a60935d39f3

[git at public.curoverse.com]

Summary of changes:
 .../app/assets/javascripts/application.js          |    3 +-
 .../app/controllers/actions_controller.rb          |    2 -
 .../app/controllers/collections_controller.rb      |   14 +-
 apps/workbench/app/controllers/users_controller.rb |    3 -
 apps/workbench/app/models/arvados_base.rb          |    6 +-
 apps/workbench/app/models/link.rb                  |    2 +-
 doc/admin/cheat_sheet.html.textile.liquid          |    4 -
 doc/api/schema/Link.html.textile.liquid            |    2 -
 doc/api/schema/Log.html.textile.liquid             |    1 -
 .../create-standard-objects.html.textile.liquid    |    2 -
 .../tutorial-trait-search.html.textile.liquid      |   18 +-
 services/api/Gemfile                               |    2 +-
 services/api/Gemfile.lock                          |    5 +-
 .../api/app/controllers/application_controller.rb  |   39 +++--
 .../arvados/v1/collections_controller.rb           |    7 -
 .../app/controllers/arvados/v1/jobs_controller.rb  |    2 +-
 .../arvados/v1/keep_disks_controller.rb            |   15 +-
 .../app/controllers/arvados/v1/links_controller.rb |   57 ++++++-
 .../app/controllers/arvados/v1/logs_controller.rb  |   32 ++++
 .../app/controllers/arvados/v1/nodes_controller.rb |   25 ++--
 .../arvados/v1/repositories_controller.rb          |    2 +-
 .../arvados/v1/user_agreements_controller.rb       |   26 ++--
 .../app/controllers/arvados/v1/users_controller.rb |   15 +-
 .../app/controllers/user_sessions_controller.rb    |   10 +-
 services/api/app/models/arvados_model.rb           |  101 ++++++++---
 services/api/app/models/collection.rb              |    4 +
 services/api/app/models/job.rb                     |    4 +
 services/api/app/models/keep_disk.rb               |    6 +-
 services/api/app/models/link.rb                    |   24 ++-
 services/api/app/models/log.rb                     |   15 ++-
 services/api/app/models/user.rb                    |   32 +---
 .../migrate/20140325175653_remove_kind_columns.rb  |   27 +++
 services/api/db/schema.rb                          |   40 ++---
 services/api/lib/kind_and_etag.rb                  |    5 +-
 services/api/test/fixtures/groups.yml              |    6 +
 services/api/test/fixtures/links.yml               |   40 ----
 services/api/test/fixtures/logs.yml                |    3 +
 services/api/test/fixtures/virtual_machines.yml    |    5 +
 .../functional/arvados/v1/links_controller_test.rb |  187 +++++++++++++++++++-
 .../functional/arvados/v1/logs_controller_test.rb  |   27 +++
 .../functional/arvados/v1/users_controller_test.rb |   34 ++--
 services/api/test/integration/permissions_test.rb  |   18 --
 services/api/test/integration/valid_links_test.rb  |   39 ++++
 services/api/test/unit/log_test.rb                 |    1 -
 services/api/test/unit/user_test.rb                |   44 +++---
 45 files changed, 657 insertions(+), 299 deletions(-)
 create mode 100644 services/api/db/migrate/20140325175653_remove_kind_columns.rb
 create mode 100644 services/api/test/fixtures/logs.yml
 create mode 100644 services/api/test/integration/valid_links_test.rb

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