[ARVADOS] updated: cb2aec9c9a0fb6c4d15b9b3db25e59f3c531df42

git at public.curoverse.com git at public.curoverse.com
Fri Dec 27 18:00:25 EST 2013


Summary of changes:
 doc/api/crunch-scripts.textile                |    4 ++--
 doc/api/index.textile                         |   12 ++++++------
 doc/api/schema/ApiClient.textile              |    2 +-
 doc/api/schema/ApiClientAuthorization.textile |    2 +-
 doc/api/schema/AuthorizedKey.textile          |    2 +-
 doc/api/schema/Collection.textile             |    4 ++--
 doc/api/schema/Commit.textile                 |    2 +-
 doc/api/schema/CommitAncestor.textile         |    2 +-
 doc/api/schema/Group.textile                  |    2 +-
 doc/api/schema/Human.textile                  |    2 +-
 doc/api/schema/Job.textile                    |    6 +++---
 doc/api/schema/JobTask.textile                |    6 +++---
 doc/api/schema/KeepDisk.textile               |    2 +-
 doc/api/schema/Link.textile                   |    4 ++--
 doc/api/schema/Log.textile                    |    2 +-
 doc/api/schema/Node.textile                   |    2 +-
 doc/api/schema/PipelineInstance.textile       |    2 +-
 doc/api/schema/PipelineTemplate.textile       |    2 +-
 doc/api/schema/Repository.textile             |    2 +-
 doc/api/schema/Specimen.textile               |    2 +-
 doc/api/schema/Trait.textile                  |    2 +-
 doc/api/schema/User.textile                   |    2 +-
 doc/api/schema/VirtualMachine.textile         |    2 +-
 23 files changed, 35 insertions(+), 35 deletions(-)

       via  cb2aec9c9a0fb6c4d15b9b3db25e59f3c531df42 (commit)
      from  c5293d314b5ac46ef712ffbee0c2fa64e8baba52 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit cb2aec9c9a0fb6c4d15b9b3db25e59f3c531df42
Author: Tim Pierce <twp at clinicalfuture.com>
Date:   Fri Dec 27 18:00:16 2013 -0500

    Fixed more broken links, normalized styles. (refs #1608)

diff --git a/doc/api/crunch-scripts.textile b/doc/api/crunch-scripts.textile
index 3048fa7..076a589 100644
--- a/doc/api/crunch-scripts.textile
+++ b/doc/api/crunch-scripts.textile
@@ -20,8 +20,8 @@ A task's context is provided in environment variables.
 
 table(table table-bordered table-condensed).
 |Environment variable|Description|
-|@JOB_UUID@|UUID of the current "Job":schema/Jobs.html|
-|@TASK_UUID@|UUID of the current "JobTask":schema/JobTasks.html|
+|@JOB_UUID@|UUID of the current "Job":schema/Job.html|
+|@TASK_UUID@|UUID of the current "JobTask":schema/JobTask.html|
 |@ARVADOS_API_HOST@|Hostname and port number of API server|
 |@ARVADOS_API_TOKEN@|Authentication token to use with API calls made by the current task|
 
diff --git a/doc/api/index.textile b/doc/api/index.textile
index 271b2da..11cf0ed 100644
--- a/doc/api/index.textile
+++ b/doc/api/index.textile
@@ -13,16 +13,16 @@ h2. Concepts
 * Resources in requests and responses adhere to a "common structure":resources.html.
 * API transactions use common "REST methods":methods.html.
 * API transactions are subject to a "permission model":permission-model.html.
-* "Job tasks":schema/JobTasks.html use some special API features.
+* "Job tasks":schema/JobTask.html use some special API features.
 
 h2. Resources
 
 h3. Generic Resources
 
-* "Collections":schema/Collections.html
-* "Jobs":schema/Jobs.html
-* "JobTasks":schema/JobTasks.html
-* "Links":schema/Links.html
+* "Collection":schema/Collection.html
+* "Job":schema/Job.html
+* "JobTask":schema/JobTask.html
+* "Link":schema/Link.html
 * "Log":schema/Log.html
 * "PipelineTemplate":schema/PipelineTemplate.html
 * "PipelineInstance":schema/PipelineInstance.html
@@ -36,7 +36,7 @@ h3. Authentication
 
 These Arvados resources govern authorization and "authentication":authentication.html:
 
-* "ApiClients":schema/ApiClients.html
+* "ApiClient":schema/ApiClient.html
 * "ApiClientAuthorization":schema/ApiClientAuthorization.html
 * "AuthorizedKey":schema/AuthorizedKey.html
 
diff --git a/doc/api/schema/ApiClient.textile b/doc/api/schema/ApiClient.textile
index 004ed15..3d835fb 100644
--- a/doc/api/schema/ApiClient.textile
+++ b/doc/api/schema/ApiClient.textile
@@ -32,7 +32,7 @@ h2. Resources
 Each ApiClient has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |name|string|||
 |url_prefix|string|||
 |is_trusted|boolean|||
diff --git a/doc/api/schema/ApiClientAuthorization.textile b/doc/api/schema/ApiClientAuthorization.textile
index 8e71afe..289ff76 100644
--- a/doc/api/schema/ApiClientAuthorization.textile
+++ b/doc/api/schema/ApiClientAuthorization.textile
@@ -31,7 +31,7 @@ h2. Resources
 An ApiClientAuthorization is not a generic Arvados resource.  The full list of properties that belong to an ApiClientAuthorization is:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |api_token|string|||
 |api_client_id|integer|||
 |user_id|integer|||
diff --git a/doc/api/schema/AuthorizedKey.textile b/doc/api/schema/AuthorizedKey.textile
index d1b57dd..aec56ff 100644
--- a/doc/api/schema/AuthorizedKey.textile
+++ b/doc/api/schema/AuthorizedKey.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each AuthorizedKey has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |name|string|||
 |key_type|string|||
 |authorized_user_uuid|string|||
diff --git a/doc/api/schema/Collection.textile b/doc/api/schema/Collection.textile
index 0b0e970..485ab3c 100644
--- a/doc/api/schema/Collection.textile
+++ b/doc/api/schema/Collection.textile
@@ -8,7 +8,7 @@ navorder: 4
 
 h1. Collection
 
-This resource concerns metadata, usage accounting, and integrity checks for data stored on the cloud.  Reading and writing the data _per se_ is achieved by the "Keep":{{ baseurl }}/user/intro-keep.html storage system.
+This resource concerns metadata, usage accounting, and integrity checks for data stored on the cloud.  Reading and writing the data _per se_ is achieved by the "Keep":/user/tutorials/tutorial-keep.html storage system.
 
 
 h2. Methods
@@ -34,7 +34,7 @@ h2. Resource
 Each collection has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |locator|string|||
 |portable_data_hash|string|||
 |name|string|||
diff --git a/doc/api/schema/Commit.textile b/doc/api/schema/Commit.textile
index 19c54b8..0a02d8f 100644
--- a/doc/api/schema/Commit.textile
+++ b/doc/api/schema/Commit.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Commit has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |repository_name|string|||
 |sha1|string|||
 |message|string|||
diff --git a/doc/api/schema/CommitAncestor.textile b/doc/api/schema/CommitAncestor.textile
index 56fd5c5..aac8698 100644
--- a/doc/api/schema/CommitAncestor.textile
+++ b/doc/api/schema/CommitAncestor.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each CommitAncestor has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |repository_name|string|||
 |descendant|string|||
 |ancestor|string|||
diff --git a/doc/api/schema/Group.textile b/doc/api/schema/Group.textile
index 6854241..650cbb7 100644
--- a/doc/api/schema/Group.textile
+++ b/doc/api/schema/Group.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Group has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |name|string|||
 |description|text|||
 |updated_at|datetime|||
diff --git a/doc/api/schema/Human.textile b/doc/api/schema/Human.textile
index 9fce0ad..596cb0d 100644
--- a/doc/api/schema/Human.textile
+++ b/doc/api/schema/Human.textile
@@ -31,6 +31,6 @@ h2. Resources
 Each Human has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |properties|Hash|||
 |updated_at|datetime|||
diff --git a/doc/api/schema/Job.textile b/doc/api/schema/Job.textile
index 8c1e61b..17e7358 100644
--- a/doc/api/schema/Job.textile
+++ b/doc/api/schema/Job.textile
@@ -22,7 +22,7 @@ API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/jobs@
 h3. Additional parameters for "Create" method
 
 table(table table-bordered table-condensed).
-|*Parameter name*|*Type*|*Description*|
+|_. Parameter name|_. Type|_. Description|
 |allow_duplicate|boolean|If true, a new job is submitted even if an identical job has already been submitted (and has not failed). If false or not supplied, a new job will _not_ be submitted and the existing job will be returned in the API response.|
 
 h3. Queue
@@ -44,7 +44,7 @@ h2. Resource
 Each job has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Notes*|
+|_. Attribute|_. Type|_. Description|_. Notes|
 |submit_id|string|Unique ID provided by client when job was submitted|Optional. Can be used by client to ensure idempotence|
 |priority|string|||
 |runtime_constraints{}|list|Constraints that must be satisfied by the job/task scheduler in order to run the job.|See below.|
@@ -66,7 +66,7 @@ table(table table-bordered table-condensed).
 h3. Runtime constraints
 
 table(table table-bordered table-condensed).
-|*Key*|*Type*|*Description*|*Implemented*|
+|_. Key|_. Type|_. Description|_. Implemented|
 |dependencies{}|list|[
  {
   "name": "freebayes",
diff --git a/doc/api/schema/JobTask.textile b/doc/api/schema/JobTask.textile
index 04b8bdc..4efaa09 100644
--- a/doc/api/schema/JobTask.textile
+++ b/doc/api/schema/JobTask.textile
@@ -8,7 +8,7 @@ navorder: 10
 
 h1. JobTask
 
-A Job Task is a well defined independently-computable portion of a "Job":Jobs.html.
+A Job Task is a well defined independently-computable portion of a "Job":Job.html.
 
 Job tasks are created two ways:
 * When a job starts, it is seeded with a job task with @sequence=0@ and an empty @parameters{}@ list.
@@ -31,7 +31,7 @@ h2. Resources
 Each JobTask has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |sequence|integer|Execution sequence.
 A step cannot be run until all steps with lower sequence numbers have completed.
 Job steps with the same sequence number can be run in any order.||
@@ -43,7 +43,7 @@ Job steps with the same sequence number can be run in any order.||
 The following attributes should not be updated by anyone other than the job manager:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Notes*|
+|_. Attribute|_. Type|_. Description|_. Notes|
 |qsequence|integer|Order of arrival|0-based|
 |job_uuid|string|||
 |created_by_job_task_uuid|string|||
diff --git a/doc/api/schema/KeepDisk.textile b/doc/api/schema/KeepDisk.textile
index 7ab4cf7..152ea8d 100644
--- a/doc/api/schema/KeepDisk.textile
+++ b/doc/api/schema/KeepDisk.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each KeepDisk has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |ping_secret|string|||
 |node_uuid|string|||
 |filesystem_uuid|string|||
diff --git a/doc/api/schema/Link.textile b/doc/api/schema/Link.textile
index 0b2cf5e..ed8271d 100644
--- a/doc/api/schema/Link.textile
+++ b/doc/api/schema/Link.textile
@@ -26,7 +26,7 @@ h2. Resource
 Each link has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|
+|_. Attribute|_. Type|_. Description|
 |tail_uuid|string|Object UUID at the tail (start, source, origin) of this link|
 |tail_kind|string|Object kind at the tail (start, source, origin) of this link|
 |link_class|string|Class (see below)|
@@ -40,7 +40,7 @@ h2. Link classes
 Some classes are pre-defined by convention and have standard meanings attached to names.
 
 table(table table-bordered table-condensed).
-|*link_class*|*tail_type→head_type*|*name→head_uuid {properties}*|*Notes*|
+|_. link_class|_. tail_type→head_type|_. name→head_uuid {properties}|_. Notes|
 |provenance|→Collection  |provided → _collection uuid_
 {url→http://example.com/foo.tgz, retrieved_at→1352616640.000}||
 |provenance|Job→Collection     |provided → _collection uuid_||
diff --git a/doc/api/schema/Log.textile b/doc/api/schema/Log.textile
index 590da00..b6d1b07 100644
--- a/doc/api/schema/Log.textile
+++ b/doc/api/schema/Log.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Log has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |object_kind|string|||
 |object_uuid|string|||
 |event_at|datetime|||
diff --git a/doc/api/schema/Node.textile b/doc/api/schema/Node.textile
index c63ebba..7a6e4ef 100644
--- a/doc/api/schema/Node.textile
+++ b/doc/api/schema/Node.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Node has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |slot_number|integer|||
 |hostname|string|||
 |domain|string|||
diff --git a/doc/api/schema/PipelineInstance.textile b/doc/api/schema/PipelineInstance.textile
index 1b18f8f..bdefce2 100644
--- a/doc/api/schema/PipelineInstance.textile
+++ b/doc/api/schema/PipelineInstance.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each PipelineInstance has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |pipeline_template_uuid|string|||
 |name|string|||
 |components|Hash|||
diff --git a/doc/api/schema/PipelineTemplate.textile b/doc/api/schema/PipelineTemplate.textile
index 3f80fa6..8511a49 100644
--- a/doc/api/schema/PipelineTemplate.textile
+++ b/doc/api/schema/PipelineTemplate.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each PipelineTemplate has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |name|string|||
 |components|Hash|||
 |updated_at|datetime|||
diff --git a/doc/api/schema/Repository.textile b/doc/api/schema/Repository.textile
index e7c6052..084e66e 100644
--- a/doc/api/schema/Repository.textile
+++ b/doc/api/schema/Repository.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Repository has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |name|string|||
 |fetch_url|string|||
 |push_url|string|||
diff --git a/doc/api/schema/Specimen.textile b/doc/api/schema/Specimen.textile
index dd75e9e..875c041 100644
--- a/doc/api/schema/Specimen.textile
+++ b/doc/api/schema/Specimen.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Specimen has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |material|string|||
 |updated_at|datetime|||
 |properties|Hash|||
diff --git a/doc/api/schema/Trait.textile b/doc/api/schema/Trait.textile
index 3af0744..45087a5 100644
--- a/doc/api/schema/Trait.textile
+++ b/doc/api/schema/Trait.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each Trait has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |name|string|||
 |properties|Hash|||
 |updated_at|datetime|||
diff --git a/doc/api/schema/User.textile b/doc/api/schema/User.textile
index 4df7a34..c7fadb3 100644
--- a/doc/api/schema/User.textile
+++ b/doc/api/schema/User.textile
@@ -31,7 +31,7 @@ h2. Resources
 Each User has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |email|string|||
 |first_name|string|||
 |last_name|string|||
diff --git a/doc/api/schema/VirtualMachine.textile b/doc/api/schema/VirtualMachine.textile
index 04068a2..49a23b0 100644
--- a/doc/api/schema/VirtualMachine.textile
+++ b/doc/api/schema/VirtualMachine.textile
@@ -31,6 +31,6 @@ h2. Resources
 Each VirtualMachine has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
 
 table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
+|_. Attribute|_. Type|_. Description|_. Example|
 |hostname|string|||
 |updated_at|datetime|||

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