[ARVADOS] updated: c5293d314b5ac46ef712ffbee0c2fa64e8baba52
git at public.curoverse.com
git at public.curoverse.com
Fri Dec 27 16:41:22 EST 2013
Summary of changes:
doc/api/crunch-scripts.textile | 4 +-
doc/api/index.textile | 44 +++++++-------
.../{ApiClients.textile => ApiClient.textile} | 8 +-
doc/api/schema/ApiClientAuthorization.textile | 4 +-
doc/api/schema/AuthorizedKey.textile | 6 +-
.../{Collections.textile => Collection.textile} | 8 +-
doc/api/schema/Commit.textile | 6 +-
doc/api/schema/CommitAncestor.textile | 6 +-
doc/api/schema/Group.textile | 6 +-
doc/api/schema/Human.textile | 6 +-
doc/api/schema/{Jobs.textile => Job.textile} | 10 ++--
.../schema/{JobTasks.textile => JobTask.textile} | 8 +-
doc/api/schema/KeepDisk.textile | 6 +-
doc/api/schema/Link.textile | 62 ++++++++++++-------
doc/api/schema/Links.textile | 58 ------------------
doc/api/schema/Log.textile | 6 +-
doc/api/schema/Node.textile | 6 +-
doc/api/schema/PipelineInstance.textile | 6 +-
doc/api/schema/PipelineTemplate.textile | 6 +-
doc/api/schema/Repository.textile | 6 +-
doc/api/schema/Specimen.textile | 6 +-
doc/api/schema/Trait.textile | 6 +-
doc/api/schema/User.textile | 6 +-
doc/api/schema/VirtualMachine.textile | 6 +-
docker/run.sh | 2 +-
25 files changed, 128 insertions(+), 170 deletions(-)
rename doc/api/schema/{ApiClients.textile => ApiClient.textile} (81%)
rename doc/api/schema/{Collections.textile => Collection.textile} (89%)
rename doc/api/schema/{Jobs.textile => Job.textile} (90%)
rename doc/api/schema/{JobTasks.textile => JobTask.textile} (93%)
delete mode 100644 doc/api/schema/Links.textile
via c5293d314b5ac46ef712ffbee0c2fa64e8baba52 (commit)
from 6d69aeff49ee75d8d132ef1e51a20c5caef21cc4 (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit c5293d314b5ac46ef712ffbee0c2fa64e8baba52
Author: Tim Pierce <twp at clinicalfuture.com>
Date: Fri Dec 27 16:40:59 2013 -0500
Normalize API documentation names, fix links, etc. (refs #1608)
diff --git a/doc/api/crunch-scripts.textile b/doc/api/crunch-scripts.textile
index 10f0c65..3048fa7 100644
--- a/doc/api/crunch-scripts.textile
+++ b/doc/api/crunch-scripts.textile
@@ -20,8 +20,8 @@ A task's context is provided in environment variables.
table(table table-bordered table-condensed).
|Environment variable|Description|
-|@JOB_UUID@|UUID of the current "Job":Jobs.html|
-|@TASK_UUID@|UUID of the current "JobTask":JobTasks.html|
+|@JOB_UUID@|UUID of the current "Job":schema/Jobs.html|
+|@TASK_UUID@|UUID of the current "JobTask":schema/JobTasks.html|
|@ARVADOS_API_HOST@|Hostname and port number of API server|
|@ARVADOS_API_TOKEN@|Authentication token to use with API calls made by the current task|
diff --git a/doc/api/index.textile b/doc/api/index.textile
index 5582fb0..271b2da 100644
--- a/doc/api/index.textile
+++ b/doc/api/index.textile
@@ -13,40 +13,40 @@ h2. Concepts
* Resources in requests and responses adhere to a "common structure":resources.html.
* API transactions use common "REST methods":methods.html.
* API transactions are subject to a "permission model":permission-model.html.
-* "Job tasks":job-task.html use some special API features.
+* "Job tasks":schema/JobTasks.html use some special API features.
h2. Resources
h3. Generic Resources
-* "Collections":Collections.html
-* "Jobs":Jobs.html
-* "JobTasks":JobTasks.html
-* "Links":Links.html
-* "Log":Log.html
-* "PipelineTemplate":PipelineTemplate.html
-* "PipelineInstance":PipelineInstance.html
-* "Group":Group.html
-* "Human":Human.html
-* "Specimen":Specimen.html
-* "Trait":Trait.html
-* "User":User.html
+* "Collections":schema/Collections.html
+* "Jobs":schema/Jobs.html
+* "JobTasks":schema/JobTasks.html
+* "Links":schema/Links.html
+* "Log":schema/Log.html
+* "PipelineTemplate":schema/PipelineTemplate.html
+* "PipelineInstance":schema/PipelineInstance.html
+* "Group":schema/Group.html
+* "Human":schema/Human.html
+* "Specimen":schema/Specimen.html
+* "Trait":schema/Trait.html
+* "User":schema/User.html
h3. Authentication
These Arvados resources govern authorization and "authentication":authentication.html:
-* "ApiClients":ApiClients.html
-* "ApiClientAuthorization":ApiClientAuthorization.html
-* "AuthorizedKey":AuthorizedKey.html
+* "ApiClients":schema/ApiClients.html
+* "ApiClientAuthorization":schema/ApiClientAuthorization.html
+* "AuthorizedKey":schema/AuthorizedKey.html
h3. Arvados Infrastructure
These resources govern the Arvados infrastructure itself: Git repositories, Keep disks, active nodes, etc.
-* "CommitAncestor":CommitAncestor.html
-* "Commit":Commit.html
-* "KeepDisk":KeepDisk.html
-* "Node":Node.html
-* "Repository":Repository.html
-* "VirtualMachine":VirtualMachine.html
+* "CommitAncestor":schema/CommitAncestor.html
+* "Commit":schema/Commit.html
+* "KeepDisk":schema/KeepDisk.html
+* "Node":schema/Node.html
+* "Repository":schema/Repository.html
+* "VirtualMachine":schema/VirtualMachine.html
diff --git a/doc/api/schema/ApiClients.textile b/doc/api/schema/ApiClient.textile
similarity index 81%
rename from doc/api/schema/ApiClients.textile
rename to doc/api/schema/ApiClient.textile
index 4f338f0..004ed15 100644
--- a/doc/api/schema/ApiClients.textile
+++ b/doc/api/schema/ApiClient.textile
@@ -2,18 +2,18 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: ApiClient"
+title: ApiClient
navorder: 2
---
-h1. ApiClients
+h1. ApiClient
An **ApiClient** represents a client program that has issued a request to the API server.
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/api_clients@
@@ -29,7 +29,7 @@ Side effects of creating an ApiClient.
h2. Resources
-Each ApiClient has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each ApiClient has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/ApiClientAuthorization.textile b/doc/api/schema/ApiClientAuthorization.textile
index dd841d2..8e71afe 100644
--- a/doc/api/schema/ApiClientAuthorization.textile
+++ b/doc/api/schema/ApiClientAuthorization.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: ApiClientAuthorization"
+title: ApiClientAuthorization
navorder: 1
---
@@ -12,7 +12,7 @@ A **ApiClientAuthorization** represents the API authorization token that has bee
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/api_client_authorization@
diff --git a/doc/api/schema/AuthorizedKey.textile b/doc/api/schema/AuthorizedKey.textile
index e42facc..d1b57dd 100644
--- a/doc/api/schema/AuthorizedKey.textile
+++ b/doc/api/schema/AuthorizedKey.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: AuthorizedKey"
+title: AuthorizedKey
navorder: 3
---
@@ -12,7 +12,7 @@ A **AuthorizedKey** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/authorized_key@
@@ -28,7 +28,7 @@ Side effects of creating a AuthorizedKey.
h2. Resources
-Each AuthorizedKey has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each AuthorizedKey has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Collections.textile b/doc/api/schema/Collection.textile
similarity index 89%
rename from doc/api/schema/Collections.textile
rename to doc/api/schema/Collection.textile
index 0210793..0b0e970 100644
--- a/doc/api/schema/Collections.textile
+++ b/doc/api/schema/Collection.textile
@@ -2,18 +2,18 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Collections"
+title: Collection
navorder: 4
---
-h1. Collections
+h1. Collection
This resource concerns metadata, usage accounting, and integrity checks for data stored on the cloud. Reading and writing the data _per se_ is achieved by the "Keep":{{ baseurl }}/user/intro-keep.html storage system.
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/links@
@@ -31,7 +31,7 @@ Clients can request checks of data integrity and storage redundancy.
h2. Resource
-Each collection has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each collection has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Commit.textile b/doc/api/schema/Commit.textile
index 1dcfd79..19c54b8 100644
--- a/doc/api/schema/Commit.textile
+++ b/doc/api/schema/Commit.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Commit"
+title: Commit
navorder: 6
---
@@ -12,7 +12,7 @@ A **Commit** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/commit@
@@ -28,7 +28,7 @@ Side effects of creating a Commit.
h2. Resources
-Each Commit has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Commit has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/CommitAncestor.textile b/doc/api/schema/CommitAncestor.textile
index c105d7d..56fd5c5 100644
--- a/doc/api/schema/CommitAncestor.textile
+++ b/doc/api/schema/CommitAncestor.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: CommitAncestor"
+title: CommitAncestor
navorder: 5
---
@@ -12,7 +12,7 @@ A **CommitAncestor** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/commit_ancestor@
@@ -28,7 +28,7 @@ Side effects of creating a CommitAncestor.
h2. Resources
-Each CommitAncestor has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each CommitAncestor has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Group.textile b/doc/api/schema/Group.textile
index 14e5aa0..6854241 100644
--- a/doc/api/schema/Group.textile
+++ b/doc/api/schema/Group.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Group"
+title: Group
navorder: 7
---
@@ -12,7 +12,7 @@ A **Group** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/group@
@@ -28,7 +28,7 @@ Side effects of creating a Group.
h2. Resources
-Each Group has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Group has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Human.textile b/doc/api/schema/Human.textile
index f5ccf8a..9fce0ad 100644
--- a/doc/api/schema/Human.textile
+++ b/doc/api/schema/Human.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Human"
+title: Human
navorder: 8
---
@@ -12,7 +12,7 @@ A **Human** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/human@
@@ -28,7 +28,7 @@ Side effects of creating a Human.
h2. Resources
-Each Human has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Human has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Jobs.textile b/doc/api/schema/Job.textile
similarity index 90%
rename from doc/api/schema/Jobs.textile
rename to doc/api/schema/Job.textile
index b0ccfa6..8c1e61b 100644
--- a/doc/api/schema/Jobs.textile
+++ b/doc/api/schema/Job.textile
@@ -2,11 +2,11 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Jobs"
+title: Job
navorder: 9
---
-h1. Jobs
+h1. Job
Applications submit compute jobs when:
* Provenance is important, i.e., it is worth recording how the output was produced; or
@@ -15,7 +15,7 @@ Applications submit compute jobs when:
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/jobs@
@@ -37,11 +37,11 @@ where[owner_uuid]=xyzzy-tpzed-a4lcehql0dv2u25
→ Job resource list
-This method is equivalent to the "index method":methods.html#index, except that the results are restricted to queued jobs (i.e., jobs that have not yet been started or cancelled) and order defaults to queue priority.
+This method is equivalent to the "index method":/api/methods.html#index, except that the results are restricted to queued jobs (i.e., jobs that have not yet been started or cancelled) and order defaults to queue priority.
h2. Resource
-Each job has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each job has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Notes*|
diff --git a/doc/api/schema/JobTasks.textile b/doc/api/schema/JobTask.textile
similarity index 93%
rename from doc/api/schema/JobTasks.textile
rename to doc/api/schema/JobTask.textile
index e86f111..04b8bdc 100644
--- a/doc/api/schema/JobTasks.textile
+++ b/doc/api/schema/JobTask.textile
@@ -2,11 +2,11 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: JobTasks"
+title: JobTask
navorder: 10
---
-h1. JobTasks
+h1. JobTask
A Job Task is a well defined independently-computable portion of a "Job":Jobs.html.
@@ -22,13 +22,13 @@ Job tasks have particular update semantics:
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/job_tasks@
h2. Resources
-Each JobTask has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each JobTask has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/KeepDisk.textile b/doc/api/schema/KeepDisk.textile
index 4d192e9..7ab4cf7 100644
--- a/doc/api/schema/KeepDisk.textile
+++ b/doc/api/schema/KeepDisk.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: KeepDisk"
+title: KeepDisk
navorder: 11
---
@@ -12,7 +12,7 @@ A **KeepDisk** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/keep_disk@
@@ -28,7 +28,7 @@ Side effects of creating a KeepDisk.
h2. Resources
-Each KeepDisk has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each KeepDisk has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Link.textile b/doc/api/schema/Link.textile
index a1252fb..0b2cf5e 100644
--- a/doc/api/schema/Link.textile
+++ b/doc/api/schema/Link.textile
@@ -2,41 +2,57 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Link"
-navorder: 13
+title: Link
+navorder: 12
---
h1. Link
-A **Link** represents...
+Links encode connections between Arvados objects, and from objects to primitives. Each metadata object has a tail (subject), class, name, properties, and head (object or value).
-h2. Methods
-
-See "REST methods for working with Arvados resources":methods.html
+table(table table-bordered table-condensed).
+|tail (object)| _class, name_
+→
+ _properties{}_ |head (object)|
-API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/link@
+h2. Methods
-h2. Creation
+See "REST methods for working with Arvados resources":/api/methods.html
-h3. Prerequisites
+API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/links@
-Prerequisites for creating a Link.
+h2. Resource
-h3. Side effects
+Each link has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
-Side effects of creating a Link.
+table(table table-bordered table-condensed).
+|*Attribute*|*Type*|*Description*|
+|tail_uuid|string|Object UUID at the tail (start, source, origin) of this link|
+|tail_kind|string|Object kind at the tail (start, source, origin) of this link|
+|link_class|string|Class (see below)|
+|name|string|Link type (see below)|
+|head_uuid|string|Object UUID at the head (end, destination, target) of this link|
+|head_kind|string|Object kind at the head (end, destination, target) of this link|
+|properties{}|list|Additional information, expressed as a key→value hash. Key: string. Value: string, number, array, or hash.|
-h2. Resources
+h2. Link classes
-Each Link has, in addition to the usual "attributes of Arvados resources":resources.html:
+Some classes are pre-defined by convention and have standard meanings attached to names.
table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|*Example*|
-|tail_uuid|string|||
-|tail_kind|string|||
-|link_class|string|||
-|name|string|||
-|head_uuid|string|||
-|properties|Hash|||
-|updated_at|datetime|||
-|head_kind|string|||
+|*link_class*|*tail_type→head_type*|*name→head_uuid {properties}*|*Notes*|
+|provenance|→Collection |provided → _collection uuid_
+{url→http://example.com/foo.tgz, retrieved_at→1352616640.000}||
+|provenance|Job→Collection |provided → _collection uuid_||
+|provenance|Specimen→Collection|provided → _collection uuid_||
+|provenance|Human→Specimen |provided → _specimen uuid_||
+|provenance|Human→Collection |provided → _collection uuid_||
+|human_trait|Human→Trait |measured → _trait uuid_ {value→1.83, unit→metre, measured_at→1352616640.000}||
+|identifier|→Human |hu123456 → _human uuid_||
+|permission|User→Group |can_manage → _group uuid_|Writable only by a user who can_manage this group|
+|permission|User→Group |can_read → _group uuid_ |Writable only by a user who can_manage this group.
+Gives permission to read any object owned by this group.|
+|resources|User→Collection|wants → _collection uuid_ |Determines whether data can be deleted|
+|resources|User→Job |wants → _job uuid_ |Determines whether a job can be cancelled|
+
+For links that don't make sense to share between API clients, a link class like @client.my_app_id@ or @client.my_app_id.anythinghere@ should be used.
diff --git a/doc/api/schema/Links.textile b/doc/api/schema/Links.textile
deleted file mode 100644
index 0332ca9..0000000
--- a/doc/api/schema/Links.textile
+++ /dev/null
@@ -1,58 +0,0 @@
----
-layout: default
-navsection: api
-navmenu: Schema
-title: "Resource: Links"
-navorder: 12
----
-
-h1. Links
-
-Links encode connections between Arvados objects, and from objects to primitives. Each metadata object has a tail (subject), class, name, properties, and head (object or value).
-
-table(table table-bordered table-condensed).
-|tail (object)| _class, name_
-→
- _properties{}_ |head (object)|
-
-h2. Methods
-
-See "REST methods for working with Arvados resources":methods.html
-
-API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/links@
-
-h2. Resource
-
-Each link has, in addition to the usual "attributes of Arvados resources":resources.html:
-
-table(table table-bordered table-condensed).
-|*Attribute*|*Type*|*Description*|
-|tail_uuid|string|Object UUID at the tail (start, source, origin) of this link|
-|tail_kind|string|Object kind at the tail (start, source, origin) of this link|
-|link_class|string|Class (see below)|
-|name|string|Link type (see below)|
-|head_uuid|string|Object UUID at the head (end, destination, target) of this link|
-|head_kind|string|Object kind at the head (end, destination, target) of this link|
-|properties{}|list|Additional information, expressed as a key→value hash. Key: string. Value: string, number, array, or hash.|
-
-h2. Link classes
-
-Some classes are pre-defined by convention and have standard meanings attached to names.
-
-table(table table-bordered table-condensed).
-|*link_class*|*tail_type→head_type*|*name→head_uuid {properties}*|*Notes*|
-|provenance|→Collection |provided → _collection uuid_
-{url→http://example.com/foo.tgz, retrieved_at→1352616640.000}||
-|provenance|Job→Collection |provided → _collection uuid_||
-|provenance|Specimen→Collection|provided → _collection uuid_||
-|provenance|Human→Specimen |provided → _specimen uuid_||
-|provenance|Human→Collection |provided → _collection uuid_||
-|human_trait|Human→Trait |measured → _trait uuid_ {value→1.83, unit→metre, measured_at→1352616640.000}||
-|identifier|→Human |hu123456 → _human uuid_||
-|permission|User→Group |can_manage → _group uuid_|Writable only by a user who can_manage this group|
-|permission|User→Group |can_read → _group uuid_ |Writable only by a user who can_manage this group.
-Gives permission to read any object owned by this group.|
-|resources|User→Collection|wants → _collection uuid_ |Determines whether data can be deleted|
-|resources|User→Job |wants → _job uuid_ |Determines whether a job can be cancelled|
-
-For links that don't make sense to share between API clients, a link class like @client.my_app_id@ or @client.my_app_id.anythinghere@ should be used.
diff --git a/doc/api/schema/Log.textile b/doc/api/schema/Log.textile
index 516f0d3..590da00 100644
--- a/doc/api/schema/Log.textile
+++ b/doc/api/schema/Log.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Log"
+title: Log
navorder: 14
---
@@ -12,7 +12,7 @@ A **Log** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/log@
@@ -28,7 +28,7 @@ Side effects of creating a Log.
h2. Resources
-Each Log has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Log has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Node.textile b/doc/api/schema/Node.textile
index aefde93..c63ebba 100644
--- a/doc/api/schema/Node.textile
+++ b/doc/api/schema/Node.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Node"
+title: Node
navorder: 15
---
@@ -12,7 +12,7 @@ A **Node** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/node@
@@ -28,7 +28,7 @@ Side effects of creating a Node.
h2. Resources
-Each Node has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Node has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/PipelineInstance.textile b/doc/api/schema/PipelineInstance.textile
index 9ae4c4e..1b18f8f 100644
--- a/doc/api/schema/PipelineInstance.textile
+++ b/doc/api/schema/PipelineInstance.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: PipelineInstance"
+title: PipelineInstance
navorder: 16
---
@@ -12,7 +12,7 @@ A **PipelineInstance** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/pipeline_instance@
@@ -28,7 +28,7 @@ Side effects of creating a PipelineInstance.
h2. Resources
-Each PipelineInstance has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each PipelineInstance has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/PipelineTemplate.textile b/doc/api/schema/PipelineTemplate.textile
index ac89b6d..3f80fa6 100644
--- a/doc/api/schema/PipelineTemplate.textile
+++ b/doc/api/schema/PipelineTemplate.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: PipelineTemplate"
+title: PipelineTemplate
navorder: 17
---
@@ -12,7 +12,7 @@ A **PipelineTemplate** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/pipeline_template@
@@ -28,7 +28,7 @@ Side effects of creating a PipelineTemplate.
h2. Resources
-Each PipelineTemplate has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each PipelineTemplate has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Repository.textile b/doc/api/schema/Repository.textile
index 65755dc..e7c6052 100644
--- a/doc/api/schema/Repository.textile
+++ b/doc/api/schema/Repository.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Repository"
+title: Repository
navorder: 18
---
@@ -12,7 +12,7 @@ A **Repository** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/repository@
@@ -28,7 +28,7 @@ Side effects of creating a Repository.
h2. Resources
-Each Repository has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Repository has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Specimen.textile b/doc/api/schema/Specimen.textile
index 5ecb59b..dd75e9e 100644
--- a/doc/api/schema/Specimen.textile
+++ b/doc/api/schema/Specimen.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Specimen"
+title: Specimen
navorder: 19
---
@@ -12,7 +12,7 @@ A **Specimen** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/specimen@
@@ -28,7 +28,7 @@ Side effects of creating a Specimen.
h2. Resources
-Each Specimen has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Specimen has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/Trait.textile b/doc/api/schema/Trait.textile
index 9a1b07f..3af0744 100644
--- a/doc/api/schema/Trait.textile
+++ b/doc/api/schema/Trait.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: Trait"
+title: Trait
navorder: 20
---
@@ -12,7 +12,7 @@ A **Trait** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/trait@
@@ -28,7 +28,7 @@ Side effects of creating a Trait.
h2. Resources
-Each Trait has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each Trait has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/User.textile b/doc/api/schema/User.textile
index 2d3445f..4df7a34 100644
--- a/doc/api/schema/User.textile
+++ b/doc/api/schema/User.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: User"
+title: User
navorder: 21
---
@@ -12,7 +12,7 @@ A **User** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/user@
@@ -28,7 +28,7 @@ Side effects of creating a User.
h2. Resources
-Each User has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each User has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/doc/api/schema/VirtualMachine.textile b/doc/api/schema/VirtualMachine.textile
index 36cde5f..04068a2 100644
--- a/doc/api/schema/VirtualMachine.textile
+++ b/doc/api/schema/VirtualMachine.textile
@@ -2,7 +2,7 @@
layout: default
navsection: api
navmenu: Schema
-title: "Resource: VirtualMachine"
+title: VirtualMachine
navorder: 22
---
@@ -12,7 +12,7 @@ A **VirtualMachine** represents...
h2. Methods
-See "REST methods for working with Arvados resources":methods.html
+See "REST methods for working with Arvados resources":/api/methods.html
API endpoint base: @https://{{ site.arvados_api_host }}/arvados/v1/virtual_machine@
@@ -28,7 +28,7 @@ Side effects of creating a VirtualMachine.
h2. Resources
-Each VirtualMachine has, in addition to the usual "attributes of Arvados resources":resources.html:
+Each VirtualMachine has, in addition to the usual "attributes of Arvados resources":/api/resources.html:
table(table table-bordered table-condensed).
|*Attribute*|*Type*|*Description*|*Example*|
diff --git a/docker/run.sh b/docker/run.sh
index ce822a9..c8ddabe 100755
--- a/docker/run.sh
+++ b/docker/run.sh
@@ -212,7 +212,7 @@ function do_start {
make_keep_volumes
for v in ${keep_volumes[*]}
do
- [ -f $v/keep/.metadata.yml ] && rm $v/keep/.metadata.yml
+ [ -f $v/keep/.metadata.yml ] && sudo rm $v/keep/.metadata.yml
done
start_container "25107:25107" "keep_server_0" \
"${keep_volumes[0]}:/dev/keep-0" \
-----------------------------------------------------------------------
hooks/post-receive
--
More information about the arvados-commits
mailing list