[ARVADOS] updated: 73e1bfac301b9285f734374abe84d8146897c585

[git at public.curoverse.com]

Summary of changes:
 doc/_includes/0-filter.py                          |   35 +
 doc/_includes/parallel_hash_script.py              |   90 +
 doc/_includes/tutorial_hash_script.py              |   63 +
 doc/_layouts/default.html                          |   55 +-
 doc/css/bootstrap-responsive.min.css               |   20 +
 doc/css/bootstrap.css                              | 6307 ++++++++++++++++++++
 doc/install/client.textile                         |   17 +-
 doc/js/bootstrap.min.js                            |    7 +
 doc/js/jquery.min.js                               |    5 +
 doc/user/{ => examples}/crunch-examples.textile    |    2 +-
 doc/user/getting_started/check-environment.textile |   53 +
 doc/user/{ => getting_started}/ssh-access.textile  |   43 +-
 doc/user/getting_started/workbench.textile         |   17 +
 doc/user/index.textile                             |   36 +-
 doc/user/intro-git.md                              |   67 -
 doc/user/intro-jobs.textile                        |  106 -
 doc/user/{ => reference}/api-tokens.textile        |    7 +-
 .../crunch-utility-libraries.textile               |    4 +-
 doc/user/{ => reference}/sdk-cli.textile           |    4 +-
 doc/user/tutorial-firstscript.textile              |   42 -
 doc/user/tutorial-gatk-variantfiltration.textile   |  125 -
 doc/user/tutorial-job-debug.textile                |  168 -
 doc/user/tutorial-job1.textile                     |  252 -
 doc/user/tutorial-keep.textile                     |   47 -
 doc/user/tutorial-new-pipeline.textile             |  358 --
 doc/user/tutorial-trait-search.textile             |  267 -
 doc/user/tutorials/tutorial-firstscript.textile    |  119 +
 .../tutorial-gatk-variantfiltration.textile        |  216 +
 doc/user/tutorials/tutorial-job-debug.textile      |  155 +
 doc/user/tutorials/tutorial-job1.textile           |  231 +
 doc/user/tutorials/tutorial-keep.textile           |  126 +
 doc/user/tutorials/tutorial-new-pipeline.textile   |  157 +
 doc/user/tutorials/tutorial-parallel.textile       |   80 +
 doc/user/tutorials/tutorial-trait-search.textile   |  273 +
 34 files changed, 8067 insertions(+), 1487 deletions(-)
 create mode 100644 doc/_includes/0-filter.py
 create mode 100644 doc/_includes/parallel_hash_script.py
 create mode 100644 doc/_includes/tutorial_hash_script.py
 create mode 100644 doc/css/bootstrap-responsive.min.css
 create mode 100644 doc/css/bootstrap.css
 create mode 100644 doc/js/bootstrap.min.js
 create mode 100644 doc/js/jquery.min.js
 rename doc/user/{ => examples}/crunch-examples.textile (99%)
 create mode 100644 doc/user/getting_started/check-environment.textile
 rename doc/user/{ => getting_started}/ssh-access.textile (88%)
 create mode 100644 doc/user/getting_started/workbench.textile
 delete mode 100644 doc/user/intro-git.md
 delete mode 100644 doc/user/intro-jobs.textile
 rename doc/user/{ => reference}/api-tokens.textile (88%)
 rename doc/user/{ => reference}/crunch-utility-libraries.textile (98%)
 rename doc/user/{ => reference}/sdk-cli.textile (97%)
 delete mode 100644 doc/user/tutorial-firstscript.textile
 delete mode 100644 doc/user/tutorial-gatk-variantfiltration.textile
 delete mode 100644 doc/user/tutorial-job-debug.textile
 delete mode 100644 doc/user/tutorial-job1.textile
 delete mode 100644 doc/user/tutorial-keep.textile
 delete mode 100644 doc/user/tutorial-new-pipeline.textile
 delete mode 100644 doc/user/tutorial-trait-search.textile
 create mode 100644 doc/user/tutorials/tutorial-firstscript.textile
 create mode 100644 doc/user/tutorials/tutorial-gatk-variantfiltration.textile
 create mode 100644 doc/user/tutorials/tutorial-job-debug.textile
 create mode 100644 doc/user/tutorials/tutorial-job1.textile
 create mode 100644 doc/user/tutorials/tutorial-keep.textile
 create mode 100644 doc/user/tutorials/tutorial-new-pipeline.textile
 create mode 100644 doc/user/tutorials/tutorial-parallel.textile
 create mode 100644 doc/user/tutorials/tutorial-trait-search.textile

       via  73e1bfac301b9285f734374abe84d8146897c585 (commit)
       via  c91893eeff22e403bf29fb28f801d3b32d000947 (commit)
       via  6accc2d78a6845f2cd0eee0f3c13ac785dc9b1d8 (commit)
       via  e12b10d886b1739bef1587b39ca5753fb6163771 (commit)
       via  b90d8148a209857c2c37d385380033e660112ece (commit)
       via  99f067d87504c538932432aa5a8b7c62bfa244bf (commit)
       via  db05eb136e0e8c671118dedd4e10299593fed628 (commit)
       via  5e9fbf33f20ecbc8584ca16f9e736763bc70e2e2 (commit)
       via  2183113c4c357e07719251854e3d249cdcd394dd (commit)
       via  9262dfeaba64d589cc8266cfc02b6a2b10278d48 (commit)
       via  a9492125f9b5c4cd691b604823d54181cf04139d (commit)
       via  98ef9732a8d17539a2de40a912010b05827a369c (commit)
       via  33bd5c3ad192c2587f320e94bf35036a17192155 (commit)
      from  ac220a417a971f3598c30ac7a10161f6829f5691 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
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commit 73e1bfac301b9285f734374abe84d8146897c585
Merge: ac220a4 c91893e
Author: Peter Amstutz <peter.amstutz at clinicalfuture.com>
Date:   Wed Dec 18 12:01:59 2013 -0500

    Merge branch '1495-crunch-documentation'


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