[GET-dev] het R?

[Kimberly Robasky]

Nice - very useful, thanks!!!

Is there a central repository I can dump all our sequence data to so
we don't each have to download our own copies if/when we want to grep
SNPs?
How about snp-dev:/nomirror/get-seq?

-Kim


On Tue, May 25, 2010 at 10:57 AM, Abraham Rosenbaum
<rosenbaum4 at gmail.com> wrote:
> Hi Kim,
> This is one of the rare cases where neither of the two alleles are
> reference. In this case the ref allele is T and the called SNPs are
> G/A. The original file from CGI reports:
>
> amr13 at orchestra:/groups/pgp/amr/CGI_19240$ zgrep 104487265
> var-GS000000088-ASM.tsv.gz
> 15346429        2       1       chr14   104487264       104487265
>  snp     T       G       165     2143545
> 15346429        2       2       chr14   104487264       104487265
>  snp     T       A       165     2143546
>
> -Abraham
>
> On Tue, May 25, 2010 at 10:33 AM, Kimberly Robasky <krobasky at gmail.com> wrote:
>> http://evidence.personalgenomes.org/AHNAK2-E1856D
>>
>> What is the meaning of this?:
>> NA19240
>> het R @ chr14:104487265
>>
>> I thought acceptable values were AGCT?
>>
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>