[arvados] updated: 2.7.0-5994-g651e6f0c4e
git repository hosting
git at public.arvados.org
Mon Feb 5 19:57:39 UTC 2024
Summary of changes:
build/README | 11 ++-
build/package-build-dockerfiles/Makefile | 15 ----
build/package-build-dockerfiles/centos7/Dockerfile | 92 ---------------------
.../package-build-dockerfiles/debian10/Dockerfile | 76 -----------------
.../ubuntu1804/Dockerfile | 75 -----------------
build/package-test-dockerfiles/Makefile | 15 ----
build/package-test-dockerfiles/centos7/Dockerfile | 37 ---------
.../centos7/localrepo.repo | 5 --
build/package-test-dockerfiles/debian10/Dockerfile | 27 ------
.../package-test-dockerfiles/ubuntu1804/Dockerfile | 32 -------
.../ubuntu1804/etc-apt-preferences.d-arvados | 3 -
.../common-test-rails-server-package.sh | 4 -
build/package-testing/rpm-common-test-packages.sh | 29 +------
build/run-build-packages-one-target.sh | 14 +++-
build/run-build-packages.sh | 14 +++-
build/run-build-test-packages-one-target.sh | 14 +++-
build/run-library.sh | 7 +-
cmd/arvados-server/arvados-controller.service | 5 --
cmd/arvados-server/arvados-dispatch-cloud.service | 5 --
cmd/arvados-server/arvados-dispatch-lsf.service | 5 --
cmd/arvados-server/arvados-git-httpd.service | 5 --
cmd/arvados-server/arvados-health.service | 5 --
cmd/arvados-server/arvados-ws.service | 5 --
cmd/arvados-server/crunch-dispatch-slurm.service | 5 --
cmd/arvados-server/keep-balance.service | 5 --
cmd/arvados-server/keep-web.service | 5 --
cmd/arvados-server/keepproxy.service | 5 --
cmd/arvados-server/keepstore.service | 5 --
doc/user/cwl/cwl-extensions.html.textile.liquid | 6 +-
lib/controller/integration_test.go | 2 +-
lib/controller/localdb/login_ldap_docker_test.sh | 2 +-
lib/install/arvados.service | 5 --
lib/install/arvadostest_docker_build.sh | 6 +-
lib/install/deps.go | 28 +++++--
lib/install/example_from_scratch.sh | 14 ++--
lib/pam/docker_test.go | 2 +-
sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml | 9 +-
sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml | 9 +-
sdk/cwl/arvados_cwl/arv-cwl-schema-v1.2.yml | 10 ++-
sdk/cwl/arvados_cwl/arvcontainer.py | 9 +-
sdk/cwl/tests/arvados-tests.yml | 5 ++
.../oom/{19975-oom.cwl => 19975-oom-mispelled.cwl} | 1 +
sdk/cwl/tests/oom/19975-oom.cwl | 2 +-
sdk/cwl/tests/oom/19975-oom3.cwl | 2 +-
sdk/go/arvados/client.go | 5 ++
sdk/go/keepclient/keepclient_test.go | 2 +-
sdk/python/arvados/commands/keepdocker.py | 50 +++++------
.../data/hello-world-ManifestV2-OCILayout.tar | Bin 24064 -> 25600 bytes
.../python/tests/data/hello-world-ManifestV2.tar | Bin 24064 -> 23040 bytes
sdk/python/tests/data/hello-world-README.txt | 25 ++++++
sdk/python/tests/test_arv_keepdocker.py | 36 +++++++-
services/api/app/models/user.rb | 20 ++++-
services/api/fpm-info.sh | 4 -
.../functional/arvados/v1/users_controller_test.rb | 31 +++++++
.../crunch-dispatch-local.service | 5 --
.../dockercleaner/arvados-docker-cleaner.service | 11 +--
services/workbench2/Makefile | 2 +-
.../cypress/integration/collection.spec.js | 1 +
.../workbench2/cypress/integration/process.spec.js | 3 +-
.../workbench2/cypress/integration/project.spec.js | 1 +
services/workbench2/docker/Dockerfile | 4 +-
.../details-attribute/details-attribute.tsx | 4 +-
.../multiselect-toolbar/MultiselectToolbar.tsx | 7 +-
.../ms-toolbar-overflow-wrapper.tsx | 4 +-
.../resource-type-filters/resource-type-filters.ts | 24 ++++++
.../all-processes-panel/all-processes-panel.tsx | 3 +-
.../src/views/process-panel/process-io-card.tsx | 50 +++++++++--
.../src/views/process-panel/process-panel-root.tsx | 61 +++++++-------
.../search-results-panel-view.tsx | 58 ++++++-------
.../workflow-panel/registered-workflow-panel.tsx | 18 ++--
.../workflow-panel/workflow-processes-panel.tsx | 3 +
tools/compute-images/scripts/base.sh | 15 ++--
...nsure-encrypted-partitions-aws-ebs-autoscale.sh | 16 +++-
.../usr-local-bin-ensure-encrypted-partitions.sh | 16 +++-
.../multiple_hostnames/pillars/arvados.sls | 7 --
.../multiple_hostnames/pillars/postgresql.sls | 16 ----
.../multiple_hostnames/states/snakeoil_certs.sls | 15 +---
.../single_hostname/pillars/arvados.sls | 7 --
.../single_hostname/pillars/postgresql.sls | 16 ----
.../single_hostname/states/snakeoil_certs.sls | 13 ---
tools/salt-install/provision.sh | 37 +++++----
81 files changed, 468 insertions(+), 759 deletions(-)
delete mode 100644 build/package-build-dockerfiles/centos7/Dockerfile
delete mode 100644 build/package-build-dockerfiles/debian10/Dockerfile
delete mode 100644 build/package-build-dockerfiles/ubuntu1804/Dockerfile
delete mode 100644 build/package-test-dockerfiles/centos7/Dockerfile
delete mode 100644 build/package-test-dockerfiles/centos7/localrepo.repo
delete mode 100644 build/package-test-dockerfiles/debian10/Dockerfile
delete mode 100644 build/package-test-dockerfiles/ubuntu1804/Dockerfile
delete mode 100644 build/package-test-dockerfiles/ubuntu1804/etc-apt-preferences.d-arvados
copy sdk/cwl/tests/oom/{19975-oom.cwl => 19975-oom-mispelled.cwl} (86%)
copy lib/diagnostics/hello-world.tar => sdk/python/tests/data/hello-world-ManifestV2-OCILayout.tar (70%)
copy lib/diagnostics/hello-world.tar => sdk/python/tests/data/hello-world-ManifestV2.tar (76%)
create mode 100644 sdk/python/tests/data/hello-world-README.txt
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commit 651e6f0c4eb492a48df0e56783a970c9391237d4
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Mon Feb 5 14:57:17 2024 -0500
21158: Swap input/output card order to match process panel
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
diff --git a/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx b/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx
index c2b77c3e6d..aa4c1b29d4 100644
--- a/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx
+++ b/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx
@@ -137,8 +137,8 @@ export const RegisteredWorkflowPanel = withStyles(styles)(connect(
const panelsData: MPVPanelState[] = [
{ name: "Details" },
{ name: "Runs" },
- { name: "Inputs" },
{ name: "Outputs" },
+ { name: "Inputs" },
{ name: "Definition" },
];
return item
@@ -184,18 +184,18 @@ export const RegisteredWorkflowPanel = withStyles(styles)(connect(
<MPVPanelContent forwardProps xs maxHeight="100%">
<WorkflowProcessesPanel />
</MPVPanelContent>
- <MPVPanelContent forwardProps xs data-cy="process-inputs" maxHeight="100%">
+ <MPVPanelContent forwardProps xs data-cy="process-outputs" maxHeight="100%">
<ProcessIOCard
- label={ProcessIOCardType.INPUT}
- params={inputParams}
+ label={ProcessIOCardType.OUTPUT}
+ params={outputParams}
raw={{}}
forceShowParams={true}
/>
</MPVPanelContent>
- <MPVPanelContent forwardProps xs data-cy="process-outputs" maxHeight="100%">
+ <MPVPanelContent forwardProps xs data-cy="process-inputs" maxHeight="100%">
<ProcessIOCard
- label={ProcessIOCardType.OUTPUT}
- params={outputParams}
+ label={ProcessIOCardType.INPUT}
+ params={inputParams}
raw={{}}
forceShowParams={true}
/>
commit cf315eea954e291f56999eb5dcdec559a08e70c0
Merge: 3f35626784 7a2e919917
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Mon Feb 5 12:06:02 2024 -0500
Merge branch 'main' into 21158-wf-page-list refs #21158
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
commit 3f35626784f50e2693ebf793044698323a0a3e10
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Mon Feb 5 11:31:38 2024 -0500
21158: Set maxHeight to match new process panel layout
Fix info selection
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
diff --git a/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx b/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx
index e943ae63ea..c2b77c3e6d 100644
--- a/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx
+++ b/services/workbench2/src/views/workflow-panel/registered-workflow-panel.tsx
@@ -181,10 +181,10 @@ export const RegisteredWorkflowPanel = withStyles(styles)(connect(
</CardContent>
</Card>
</MPVPanelContent>
- <MPVPanelContent forwardProps xs>
+ <MPVPanelContent forwardProps xs maxHeight="100%">
<WorkflowProcessesPanel />
</MPVPanelContent>
- <MPVPanelContent forwardProps xs data-cy="process-inputs">
+ <MPVPanelContent forwardProps xs data-cy="process-inputs" maxHeight="100%">
<ProcessIOCard
label={ProcessIOCardType.INPUT}
params={inputParams}
@@ -192,7 +192,7 @@ export const RegisteredWorkflowPanel = withStyles(styles)(connect(
forceShowParams={true}
/>
</MPVPanelContent>
- <MPVPanelContent forwardProps xs data-cy="process-outputs">
+ <MPVPanelContent forwardProps xs data-cy="process-outputs" maxHeight="100%">
<ProcessIOCard
label={ProcessIOCardType.OUTPUT}
params={outputParams}
@@ -200,7 +200,7 @@ export const RegisteredWorkflowPanel = withStyles(styles)(connect(
forceShowParams={true}
/>
</MPVPanelContent>
- <MPVPanelContent xs>
+ <MPVPanelContent xs maxHeight="100%">
<Card className={classes.filesCard}>
<CardHeader title="Workflow Definition" />
<ProcessOutputCollectionFiles isWritable={false} currentItemUuid={workflowCollection} />
diff --git a/services/workbench2/src/views/workflow-panel/workflow-processes-panel.tsx b/services/workbench2/src/views/workflow-panel/workflow-processes-panel.tsx
index 548f8fc432..48077f9db1 100644
--- a/services/workbench2/src/views/workflow-panel/workflow-processes-panel.tsx
+++ b/services/workbench2/src/views/workflow-panel/workflow-processes-panel.tsx
@@ -10,6 +10,7 @@ import { RootState } from "store/store";
import { navigateTo } from "store/navigation/navigation-action";
import { loadDetailsPanel } from "store/details-panel/details-panel-action";
import { getProcess } from "store/processes/process";
+import { toggleOne, deselectAllOthers } from 'store/multiselect/multiselect-actions';
const mapDispatchToProps = (dispatch: Dispatch): WorkflowProcessesPanelActionProps => ({
onContextMenu: (event, resourceUuid, resources) => {
@@ -19,6 +20,8 @@ const mapDispatchToProps = (dispatch: Dispatch): WorkflowProcessesPanelActionPro
}
},
onItemClick: (uuid: string) => {
+ dispatch<any>(toggleOne(uuid))
+ dispatch<any>(deselectAllOthers(uuid))
dispatch<any>(loadDetailsPanel(uuid));
},
onItemDoubleClick: uuid => {
commit 3eb7d9fc324d53f241bce67463c61d69d4f8377a
Merge: 182cff0a8e 03985194ab
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Mon Feb 5 09:22:59 2024 -0500
Merge branch 'main' into 21158-wf-page-list
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
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