[arvados] updated: 2.6.0-302-g404736ecd

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Summary of changes:
 sdk/R/R/ArvadosR.R      | 5 +++--
 sdk/R/R/Collection.R    | 9 +--------
 sdk/R/R/autoGenAPI.R    | 4 ++++
 sdk/R/man/ArvadosR.Rd   | 5 +++--
 sdk/R/man/Collection.Rd | 2 +-
 5 files changed, 12 insertions(+), 13 deletions(-)

       via  404736ecdffc574ef81857fe3e1ec8dca1d99b09 (commit)
      from  0c90bc2654862c7ba079fb552b303aaf26de1403 (commit)

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commit 404736ecdffc574ef81857fe3e1ec8dca1d99b09
Author: Peter Amstutz <peter.amstutz at curii.com>
Date:   Thu Jun 22 09:54:01 2023 -0400

    20660: Tweaks to eliminate check warnings
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>

diff --git a/sdk/R/R/ArvadosR.R b/sdk/R/R/ArvadosR.R
index d2747bdf1..00b068c28 100644
--- a/sdk/R/R/ArvadosR.R
+++ b/sdk/R/R/ArvadosR.R
@@ -17,8 +17,9 @@
 #' \item Piotr Nowosielski}
 #'
 #' @seealso \itemize{
-#' \item \code{\link{https://github.com/arvados/arvados/blob/main/README.md}}
-#' \item \code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}}
+#' \item https://arvados.org
+#' \item https://doc.arvados.org/sdk/R/index.html
+#' \item https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R}
 #'
 #' @name ArvadosR
 NULL
diff --git a/sdk/R/R/Collection.R b/sdk/R/R/Collection.R
index 43a4b0b60..9ca74accc 100644
--- a/sdk/R/R/Collection.R
+++ b/sdk/R/R/Collection.R
@@ -9,7 +9,7 @@
 #' for exaplme actions like creating, updating, moving or removing are possible.
 #'
 #' @seealso
-#' \code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}
+#' https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R
 #'
 #' @export
 
@@ -454,10 +454,3 @@ print.Collection = function(x, ...)
     cat(paste0("Type: ", "\"", "Arvados Collection", "\""), sep = "\n")
     cat(paste0("uuid: ", "\"", x$uuid,               "\""), sep = "\n")
 }
-
-
-
-
-
-
-
diff --git a/sdk/R/R/autoGenAPI.R b/sdk/R/R/autoGenAPI.R
index c86684f8b..fbf58c2f5 100644
--- a/sdk/R/R/autoGenAPI.R
+++ b/sdk/R/R/autoGenAPI.R
@@ -9,6 +9,10 @@ getAPIDocument <- function(){
     httr::content(serverResponse, as = "parsed", type = "application/json")
 }
 
+#' generateAPI
+#'
+#' Autogenerate classes to interact with Arvados from the Arvados discovery document.
+#'
 #' @export
 generateAPI <- function()
 {
diff --git a/sdk/R/man/ArvadosR.Rd b/sdk/R/man/ArvadosR.Rd
index fe6297a27..51edb8b13 100644
--- a/sdk/R/man/ArvadosR.Rd
+++ b/sdk/R/man/ArvadosR.Rd
@@ -8,8 +8,9 @@ Arvados is an open source platform for managing, processing, and sharing genomic
 }
 \seealso{
 \itemize{
-\item \code{\link{https://github.com/arvados/arvados/blob/main/README.md}}
-\item \code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}}
+\item https://arvados.org
+\item https://doc.arvados.org/sdk/R/index.html
+\item https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R}
 }
 \author{
 \itemize{
diff --git a/sdk/R/man/Collection.Rd b/sdk/R/man/Collection.Rd
index 8ac6fcce1..0de9a842e 100644
--- a/sdk/R/man/Collection.Rd
+++ b/sdk/R/man/Collection.Rd
@@ -103,7 +103,7 @@ arvadosFile <- collection$get(fileName)
 }
 }
 \seealso{
-\code{\link{https://github.com/arvados/arvados/tree/main/sdk/R}}
+https://git.arvados.org/arvados.git/tree/HEAD:/sdk/R
 }
 \section{Public fields}{
 \if{html}{\out{<div class="r6-fields">}}

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