[arvados] updated: 2.7.0-5651-g461fdaa1b9

git repository hosting git at public.arvados.org
Wed Dec 20 22:40:39 UTC 2023


Summary of changes:
 build/get-package-version.sh                       |   2 +-
 build/package-build-dockerfiles/Makefile           |  23 +-
 build/package-build-dockerfiles/centos7/Dockerfile |  18 +-
 .../package-build-dockerfiles/debian10/Dockerfile  |  18 +-
 .../package-build-dockerfiles/debian11/Dockerfile  |  18 +-
 .../{debian11 => debian12}/Dockerfile              |  23 +-
 build/package-build-dockerfiles/rocky8/Dockerfile  |  18 +-
 .../ubuntu1804/Dockerfile                          |  18 +-
 .../ubuntu2004/Dockerfile                          |  18 +-
 .../{ubuntu2004 => ubuntu2204}/Dockerfile          |  25 +-
 .../{ubuntu2004 => ubuntu2204}/ports.list          |   8 +-
 build/package-test-dockerfiles/Makefile            |  18 +-
 .../{debian11 => debian12}/Dockerfile              |   8 +-
 .../{ubuntu2004 => ubuntu2204}/Dockerfile          |  10 +-
 ...kages-debian10.sh => test-packages-debian12.sh} |   0
 ...ges-debian10.sh => test-packages-ubuntu2204.sh} |   0
 build/run-build-packages-one-target.sh             |   2 +-
 build/run-build-packages.sh                        |   3 +
 build/run-library.sh                               |  40 +-
 build/run-tests.sh                                 |   3 +-
 doc/Gemfile.lock                                   |   2 +-
 doc/_config.yml                                    |   1 +
 doc/_includes/_install_ruby_and_bundler.liquid     |  77 +---
 doc/admin/keep-balance.html.textile.liquid         |   6 +-
 doc/admin/keep-faster-gc-s3.html.textile.liquid    |  41 ++
 doc/admin/upgrading.html.textile.liquid            |   8 +
 doc/api/keep-webdav.html.textile.liquid            |   6 +
 doc/api/methods/groups.html.textile.liquid         |   2 +-
 .../install-keep-balance.html.textile.liquid       |   2 +-
 doc/install/salt-multi-host.html.textile.liquid    |  17 +-
 doc/install/salt-single-host.html.textile.liquid   |  10 +-
 doc/sdk/python/arvados-fuse.html.textile.liquid    |   4 -
 go.mod                                             |  31 +-
 go.sum                                             |  96 ++--
 lib/boot/supervisor.go                             |  23 +-
 lib/controller/federation/conn.go                  |  72 ++-
 lib/controller/federation/user_test.go             |   4 +-
 lib/controller/localdb/container_test.go           |   1 +
 lib/controller/localdb/login_oidc.go               |  46 +-
 lib/controller/localdb/login_oidc_test.go          |  70 +++
 lib/controller/rpc/conn.go                         |  33 +-
 lib/dispatchcloud/dispatcher_test.go               |   7 +-
 lib/dispatchcloud/test/stub_driver.go              |  34 +-
 sdk/go/arvados/api.go                              |   2 +
 sdk/go/arvados/client.go                           |  68 ++-
 sdk/go/arvados/client_test.go                      |  14 +
 sdk/go/arvados/fs_base.go                          |  93 +++-
 sdk/go/arvados/fs_collection.go                    |   2 +-
 sdk/go/arvados/fs_lookup.go                        |  14 +-
 sdk/go/arvados/fs_project.go                       |   5 +-
 sdk/go/arvados/fs_project_test.go                  | 111 +++--
 sdk/go/arvados/fs_site.go                          |   8 +
 sdk/go/arvados/fs_site_test.go                     |  10 +
 sdk/go/arvadostest/api.go                          |   4 +
 sdk/go/arvadostest/fixtures.go                     |   5 +-
 sdk/go/arvadostest/oidc_provider.go                |  21 +-
 sdk/go/auth/auth.go                                |  12 +-
 sdk/go/auth/handlers_test.go                       |  36 +-
 sdk/go/keepclient/keepclient.go                    |  21 +
 .../client/api/client/CountingFileRequestBody.java |  43 +-
 .../client/api/client/CountingRequestBody.java     |  52 +++
 .../api/client/CountingStreamRequestBody.java      |  47 ++
 .../client/api/client/KeepServerApiClient.java     |   2 +-
 .../client/api/client/KeepWebApiClient.java        |  11 +
 .../client/config/ExternalConfigProvider.java      |  30 +-
 .../facade/ArvadosFacadeIntegrationTest.java       |   3 +
 sdk/python/arvados-v1-discovery.json               |   2 +-
 sdk/python/arvados/__init__.py                     |  53 ++-
 sdk/python/arvados/api.py                          |  77 ++--
 sdk/python/arvados/events.py                       | 487 ++++++++++++++------
 sdk/python/arvados/retry.py                        |  60 ++-
 sdk/python/arvados/safeapi.py                      |  45 +-
 sdk/python/arvados/util.py                         | 502 +++++++++++++--------
 sdk/python/discovery2pydoc.py                      |  89 +++-
 sdk/python/setup.py                                |  10 +-
 sdk/python/tests/run_test_server.py                |  10 +-
 sdk/python/tests/test_events.py                    | 214 ++++++---
 .../controllers/arvados/v1/schema_controller.rb    |   2 +-
 .../app/controllers/arvados/v1/users_controller.rb |  45 +-
 .../api/app/models/api_client_authorization.rb     |  64 +--
 services/api/app/models/arvados_model.rb           |  45 +-
 services/api/app/models/link.rb                    |  11 +-
 services/api/app/models/user.rb                    | 120 ++++-
 services/api/lib/simulate_job_log.rb               |  62 ---
 services/api/lib/tasks/replay_job_log.rake         |  11 -
 services/api/lib/update_permissions.rb             |  67 ++-
 services/api/test/fixtures/links.yml               |  14 +
 .../arvados/v1/collections_controller_test.rb      |   4 +-
 .../arvados/v1/groups_controller_test.rb           |   4 +-
 .../functional/arvados/v1/users_controller_test.rb |  11 +-
 services/api/test/integration/users_test.rb        |   6 +-
 services/api/test/unit/container_request_test.rb   |   6 +-
 services/api/test/unit/user_test.rb                |  10 +-
 services/fuse/arvados_fuse/command.py              |  31 +-
 services/fuse/tests/test_command_args.py           |  45 ++
 services/keep-balance/balance_run_test.go          |  78 +++-
 services/keep-balance/server.go                    |   9 +-
 services/keep-web/cache.go                         |   2 +-
 services/keep-web/handler_test.go                  |  69 ++-
 services/keep-web/server_test.go                   |   2 +-
 services/keepproxy/keepproxy.go                    |  50 +-
 services/keepstore/proxy_remote.go                 |   4 +-
 services/keepstore/pull_worker.go                  |   4 +-
 services/workbench2/Makefile                       |   3 +
 .../workbench2/cypress/integration/process.spec.js |  47 ++
 .../cypress/integration/side-panel.spec.js         |  37 ++
 services/workbench2/package.json                   |   9 +-
 services/workbench2/public/arrow-to-left.png       | Bin 10416 -> 0 bytes
 services/workbench2/public/arrow-to-right.png      | Bin 10484 -> 0 bytes
 services/workbench2/public/collapseLHS-New.svg     |  25 -
 services/workbench2/public/mui-start-icon.svg      |   1 +
 .../src/components/data-explorer/data-explorer.tsx |  67 +--
 services/workbench2/src/components/icon/icon.tsx   |   7 +
 .../multiselect-toolbar/MultiselectToolbar.tsx     |   1 +
 .../subprocess-progress-bar.test.tsx               | 165 +++++++
 .../subprocess-progress-bar.tsx                    | 105 +++++
 services/workbench2/src/components/tree/tree.tsx   |  41 +-
 services/workbench2/src/index.tsx                  |   3 +
 .../src/store/favorites/favorites-actions.ts       |   2 +
 .../src/store/navigation/navigation-action.ts      |   3 +
 .../process-logs-panel-actions.ts                  |  59 ++-
 .../public-favorites/public-favorites-actions.ts   |   2 +
 .../side-panel-tree/side-panel-tree-actions.ts     | 114 +++--
 .../subprocess-panel/subprocess-panel-actions.ts   |  81 ++++
 .../store/tree-picker/tree-picker-actions.test.ts  |   5 +-
 .../src/store/workbench/workbench-actions.ts       |   3 +-
 .../views-components/data-explorer/renderers.tsx   |  24 +
 .../side-panel-toggle/side-panel-toggle.tsx        |  15 +-
 .../side-panel-tree/side-panel-tree.tsx            |   6 +-
 .../side-panel/side-panel-collapsed.tsx            | 159 +++++++
 .../src/views-components/side-panel/side-panel.tsx |   8 +-
 .../src/views/process-panel/process-panel-root.tsx |   2 +-
 .../shared-with-me-panel/shared-with-me-panel.tsx  | 198 ++++++++
 .../subprocess-panel/subprocess-panel-root.tsx     |   6 +-
 .../views/subprocess-panel/subprocess-panel.tsx    |   2 +-
 .../workbench2/src/views/workbench/workbench.tsx   |   4 +-
 services/workbench2/yarn.lock                      | 116 +++--
 services/ws/session_v0.go                          |   1 +
 tools/arvbox/bin/arvbox                            |  18 +-
 tools/arvbox/lib/arvbox/docker/Dockerfile.demo     |   3 -
 tools/arvbox/lib/arvbox/docker/common.sh           |  32 +-
 tools/arvbox/lib/arvbox/docker/go-setup.sh         |   1 +
 tools/arvbox/lib/arvbox/docker/service/nginx/run   |  12 +-
 .../lib/arvbox/docker/service/sdk/run-service      |   6 +-
 .../lib/arvbox/docker/service/vm/run-service       |   3 +-
 .../arvbox/docker/service/workbench2/run-service   |  10 +-
 .../multi_host/aws/pillars/arvados.sls             |   5 +-
 .../multi_host/aws/pillars/nginx_passenger.sls     |  29 --
 .../multi_host/aws/pillars/nginx_snippets.sls      |  35 ++
 .../multiple_hostnames/pillars/arvados.sls         |   5 +-
 .../single_hostname/pillars/arvados.sls            |   5 +-
 tools/salt-install/installer.sh                    |   2 +-
 tools/salt-install/local.params.secrets.example    |   1 -
 tools/salt-install/provision.sh                    |  38 +-
 154 files changed, 3919 insertions(+), 1412 deletions(-)
 copy build/package-build-dockerfiles/{debian11 => debian12}/Dockerfile (83%)
 copy build/package-build-dockerfiles/{ubuntu2004 => ubuntu2204}/Dockerfile (81%)
 copy build/package-build-dockerfiles/{ubuntu2004 => ubuntu2204}/ports.list (59%)
 copy build/package-test-dockerfiles/{debian11 => debian12}/Dockerfile (76%)
 copy build/package-test-dockerfiles/{ubuntu2004 => ubuntu2204}/Dockerfile (67%)
 copy build/package-testing/{test-packages-debian10.sh => test-packages-debian12.sh} (100%)
 copy build/package-testing/{test-packages-debian10.sh => test-packages-ubuntu2204.sh} (100%)
 create mode 100644 doc/admin/keep-faster-gc-s3.html.textile.liquid
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/CountingRequestBody.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/CountingStreamRequestBody.java
 delete mode 100644 services/api/lib/simulate_job_log.rb
 delete mode 100644 services/api/lib/tasks/replay_job_log.rake
 delete mode 100644 services/workbench2/public/arrow-to-left.png
 delete mode 100644 services/workbench2/public/arrow-to-right.png
 delete mode 100644 services/workbench2/public/collapseLHS-New.svg
 create mode 100644 services/workbench2/public/mui-start-icon.svg
 create mode 100644 services/workbench2/src/components/subprocess-progress-bar/subprocess-progress-bar.test.tsx
 create mode 100644 services/workbench2/src/components/subprocess-progress-bar/subprocess-progress-bar.tsx
 create mode 100644 services/workbench2/src/views-components/side-panel/side-panel-collapsed.tsx
 create mode 100644 tools/salt-install/config_examples/multi_host/aws/pillars/nginx_snippets.sls

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commit 461fdaa1b96142b8065c131ae0334046fc71ea56
Merge: dbd3e4e8a3 afc02fe04d
Author: Tom Clegg <tom at curii.com>
Date:   Wed Dec 20 17:40:10 2023 -0500

    20318: Merge branch 'main' into 20318-disk-cache
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at curii.com>

diff --cc sdk/go/keepclient/keepclient.go
index 4e935812be,86001c01e0..08fa455ff4
--- a/sdk/go/keepclient/keepclient.go
+++ b/sdk/go/keepclient/keepclient.go
@@@ -122,10 -118,29 +122,31 @@@ type KeepClient struct 
  
  	// Disable automatic discovery of keep services
  	disableDiscovery bool
 +
 +	gatewayStack arvados.KeepGateway
  }
  
+ func (kc *KeepClient) Clone() *KeepClient {
+ 	kc.lock.Lock()
+ 	defer kc.lock.Unlock()
+ 	return &KeepClient{
+ 		Arvados:               kc.Arvados,
+ 		Want_replicas:         kc.Want_replicas,
+ 		localRoots:            kc.localRoots,
+ 		writableLocalRoots:    kc.writableLocalRoots,
+ 		gatewayRoots:          kc.gatewayRoots,
+ 		HTTPClient:            kc.HTTPClient,
+ 		Retries:               kc.Retries,
+ 		BlockCache:            kc.BlockCache,
+ 		RequestID:             kc.RequestID,
+ 		StorageClasses:        kc.StorageClasses,
+ 		DefaultStorageClasses: kc.DefaultStorageClasses,
+ 		replicasPerService:    kc.replicasPerService,
+ 		foundNonDiskSvc:       kc.foundNonDiskSvc,
+ 		disableDiscovery:      kc.disableDiscovery,
+ 	}
+ }
+ 
  func (kc *KeepClient) loadDefaultClasses() error {
  	scData, err := kc.Arvados.ClusterConfig("StorageClasses")
  	if err != nil {

-----------------------------------------------------------------------


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