[ARVADOS] updated: 1.3.0-1483-gd49b2b2d3
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git at public.curoverse.com
Wed Aug 14 17:31:04 UTC 2019
Summary of changes:
sdk/cwl/arvados_cwl/runner.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
via d49b2b2d3c9ef513335adbc5785d252bf2fb68be (commit)
from 03ac6650c846556e8607e5a3379d03b7d44e62f9 (commit)
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commit d49b2b2d3c9ef513335adbc5785d252bf2fb68be
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date: Wed Aug 14 13:30:40 2019 -0400
15361: Skip unecessary checklinks
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>
diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 4ca010bab..19a6dd98b 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -334,7 +334,7 @@ def upload_dependencies(arvrunner, name, document_loader,
builder_job_order,
discovered)
- copied, _ = document_loader.resolve_all(copy.deepcopy(cmap(workflowobj)), base_url=uri)
+ copied, _ = document_loader.resolve_all(copy.deepcopy(cmap(workflowobj)), base_url=uri, checklinks=False)
visit_class(copied, ("CommandLineTool", "Workflow"), discover_default_secondary_files)
for d in list(discovered):
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hooks/post-receive
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