[ARVADOS] updated: b8de9b3e62e82b806576b237be5f317bf378169f

[Git user]

Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py                    |  85 ++++++--
 sdk/cwl/arvados_cwl/arvcontainer.py                |  33 ++-
 sdk/cwl/arvados_cwl/arvjob.py                      |  52 ++++-
 sdk/cwl/arvados_cwl/arvworkflow.py                 |  11 +-
 sdk/cwl/arvados_cwl/done.py                        |  35 ++-
 sdk/cwl/arvados_cwl/fsaccess.py                    |  31 ++-
 sdk/cwl/arvados_cwl/runner.py                      | 158 +++++++++-----
 sdk/cwl/setup.py                                   |   4 +-
 sdk/cwl/tests/test_job.py                          |  12 +-
 sdk/cwl/tests/test_submit.py                       | 237 +++++++++++++--------
 sdk/cwl/tests/wf/expect_arvworkflow.cwl            |  22 +-
 sdk/cwl/tests/wf/expect_packed.cwl                 |   4 +-
 .../wf/{expect_packed.cwl => submit_wf_packed.cwl} |   8 +-
 .../api/config/initializers/noop_deep_munge.rb     |   9 +
 services/api/test/integration/noop_deep_munge.rb   |  35 +++
 15 files changed, 490 insertions(+), 246 deletions(-)
 copy sdk/cwl/tests/wf/{expect_packed.cwl => submit_wf_packed.cwl} (53%)
 create mode 100644 services/api/config/initializers/noop_deep_munge.rb
 create mode 100644 services/api/test/integration/noop_deep_munge.rb

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commit b8de9b3e62e82b806576b237be5f317bf378169f
Merge: e1fd558 39189b9
Author: Tom Clegg <tom at curoverse.com>
Date:   Mon Jan 23 10:41:24 2017 -0500

    Merge branch 'master' into 9998-no-count-items-available


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